1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcatgcttcatatcttcacctgaaaaccatgccaaccatccaaatgatggaatgtttagtttgggtaggtgattttacatctgtttattttgctgtccagGTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACCGCATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAG
species | Glycine max |
transcript | GLYMA13G08090.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGATGAGCGGAAGAGAATTGAGGATGCTGGTGGTGTTGTCATGTGGGCAG GTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCCEST: gi|5508875|gb|AI855433.1|AI855433
genomic: TGATGAGCGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAGgtgagataca ... tgctgtccagGTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCC
EST: AGCGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAG GTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACCEST: gi|151411248|gb|EV281059.1|EV281059
genomic: AGCGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAGgtgagataca ... tgctgtccagGTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACC
EST: TGATGAGCGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAG -TACTTGGAGG
genomic: TGATGAGCGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAGgtgagataca ... tgctgtccagGTACTTGGAGG
gatggaatgtttagtttgggtaggtgattttacatctgtttattttgctgtccagGTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACCGCATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAG
tttatttt CT-rich tract
tgtttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgcttcatatcttcacctgaaaaccatgccaaccatccaaatgatggaatgtttagtttgggtaggtgattttacatctgtttattttgctgtccagGTACTTGGAGGGTAGGAGGGGTGCTAGCAATGTCTCGTGCCTTTGGTAACCGCATGCTGAAGCAGTTTGTAGTAGCAGAACCTGAGATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC