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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtcagttggtcttcaggataagattttatctttttatatttttgaaatctgccattataaactatgacatgtctgcagTGCTACAGCCCAGAGTGTTCAGCCAATGATCATTGGTCGCTTACTTGCTGGTATAGGAATTGGTGTTACATCTGCTATAGTACCACTATACATATCTGAG

Basic information

species Glycine max
transcript GLYMA13G07780.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G07780.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 5
gtcagtcagttggtcttcaggataagatttta-tctttttatattttt-------gaaatctgccattataaactatgacatgtctgc-----agTGCTACAGCCCAGAGTGTTCAGCCAATGATCATTGGTCGCTTACTTGCTGGTATAGGAATTGGTGTTACATCTGCTATAGTACCACTATACATATCTGAG
||| |||| ||| | |  |  |||||||  || ||||| | ||| |         ||||      || ||||||      ||||   |     ||||| ||||| |||||||| ||| | ||||| |||||| | ||||||||||| || ||||||||  |  |||||||  | || ||||| ||||||||||||
gtctgtcatttgttgtagaccataagatcataatctttgtttatatcaaataaaagaaaatatttataataaacccaagtatgttcacttttcagTGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207818181|gb|GD790198.1|GD790198
EST:     TTCAATTAGCCTCAATCCCTCTAGCAATTGGAGCATTTCTTGG                         TGCTACAGCCCAGAGTGTTCAGCCAATGATCATTGGTCGCTTACTTGCTGG
genomic: TTCAATTAGCCTCAATCCCTCTAGCAATTGGAGCATTTCTTGGgtcagtcagt ... atgtctgcagTGCTACAGCCCAGAGTGTTCAGCCAATGATCATTGGTCGCTTACTTGCTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatctttttatatttttgaaatctgccattataaactatgacatgtctgcagTGCTACAGCCCAGAGTGTTCAGCCAATGATCATTGGTCGCTTACTTGCTGGTATAGGAATTGGTGTTACATCTGCTATAGTACCACTATACATATCTGAG
     tctttttatatttttg  TA-rich tract