Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actattcaatagtgtctaatgtaaccttatatcttttattcttctaatcaaaattatggtcctctaatgatgatttgattcatgactactttattggcagCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGAGCAAAGTATGTCATATGGTACACAAAATGCTCACTCCCAAGGCTTTT

Basic information

species Glycine max
transcript GLYMA13G06730.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207718951|gb|GD700733.1|GD700733
EST:     GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCACGAAG                         CTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGT
genomic: GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGgtaacaaaca ... ttattggcagCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGT
EST: gi|193697032|gb|FK638874.1|FK638874
EST:     GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG                         CTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGC
genomic: GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGgtaacaaaca ... ttattggcagCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGC
EST: gi|193609438|gb|FK564344.1|FK564344
EST:     GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG                         CTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGT
genomic: GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGgtaacaaaca ... ttattggcagCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGT
EST: gi|193510569|gb|FK468075.1|FK468075
EST:     GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG                         CTGGAAGAAATCAAT
genomic: GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGgtaacaaaca ... ttattggcagCTGGAAGAAATCAAT
EST: gi|193609973|gb|FK563535.1|FK563535
EST:     GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG                         CTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGGAANCTGG
genomic: GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGgtaacaaaca ... ttattggcagCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGG-AAGCTGG
EST: gi|17020647|gb|BM091681.1|BM091681
EST:     GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG                         CTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGT
genomic: GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGgtaacaaaca ... ttattggcagCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGT
EST: gi|207683310|gb|GD665975.1|GD665975
EST:     GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG                         CTGGAAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGG
genomic: GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGgtaacaaaca ... ttattggcagCTGGAA-GAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGG
EST: gi|11117964|gb|BF219557.1|BF219557
EST:     GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG                         CTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGT
genomic: GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGgtaacaaaca ... ttattggcagCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGT
EST: gi|193307217|gb|FK272989.1|FK272989
EST:     GAGCATATGCTGGTAGAAGCAATCAGATCTTTGACCATGAAG                         CTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGT
genomic: GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGgtaacaaaca ... ttattggcagCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGT
EST: gi|8284985|gb|BE022544.1|BE022544
EST:     GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAG                         CTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGT
genomic: GAGCATATGCTGGTAGAAGCAAACAGATCTTTGACCATGAAGgtaacaaaca ... ttattggcagCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcaaaattatggtcctctaatgatgatttgattcatgactactttattggcagCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGAGCAAAGTATGTCATATGGTACACAAAATGCTCACTCCCAAGGCTTTT
                                        ctacttt  CT-rich tract
                                         tactttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actattcaatagtgtctaatgtaaccttatatcttttattcttctaatcaaaattatggtcctctaatgatgatttgattcatgactactttattggcagCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGAGCAAAGTATGTCATATGGTACACAAAATGCTCACTCCCAAGGCTTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG