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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggaaatatttctagcttttactgtagtgctttttcttttttgctttttgcgtttcctttattattcttgctgtcatttataatttatggtcatattcagTGCTCCAATCGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTT

Basic information

species Glycine max
transcript GLYMA13G03280.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G03280.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os11g06880.1 (Oryza sativa), 3'ss of exon 2
-----------------------------------------------------------aggaaatatttctagct--------tttactgtagt---gctttttcttttttgctttttgcgtttcctttattattcttgctg---tcatttataatttatgg-tcatatt----cagTGCTCCAATCGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTT
                                                           ||  | | ||| | |          ||||||||  |    |||     | ||    | |  | |      |    ||    |       ||| | |  || ||| |  |  |    ||| |||||||| || ||||||||||||||||| || || |||||||| |||||||| || ||   |||||| |  ||||| |||||||||||  | ||  | 
gtgagatagtactcttcattattttataagccattctcaagtctcttttgttaatatcaagttattgtttttggtccacttgtgtttactgtgattgaacttcacaatattcaaatctaacttgcatactgcattttaaaccaaaacaattgacaggttttgggttgtgctgttgcagGGCTCCAATAGGGCAAGGATATGGTCTTACTGAAACATGTGCTGGCGGGACATTTTCCGAGTATGATGACAATTCTGTTGGCCGTGTTGGTGCTCCATTG

upper sequence: GLYMA13G03280.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os12g07110.1 (Oryza sativa), 3'ss of exon 7
--------------------------------------------------------------------aggaaatatttctagcttttactgtagtgctttttcttttttgctt-tttgcgtttcctttattattcttgctgtcatttataa-tttatggtcatattcagTGCTCCAATCGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTT
                                                                    |  |   | |  ||  ||| |    | ||     |    | ||||| ||||  |   | |   ||        |  ||| | || ||||||  ||  ||||| | |||||| || ||||| ||||||||||| ||||| |||||||| || ||||| |||||   ||||||  ||||||| || || |||||  | || || 
gtaagattatgaataccatcatcccatgttgttagttgccatccttgtttaatgaactatgtttaaacacaatgaaatcataaatttaaacacaatgaagaatgaactatgcttatttgtttcaacatgcatagagacctgggaattaacaagtttatg--caatttcagGGTTCCAATAGGGCAAGGGTATGGTCTTACTGAGACATGTGCTGGAGGAACATTTTCTGAGTATGATGACCCATCTGTTGGTCGCGTTGGTGCTCCACTA

upper sequence: GLYMA13G03280.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G118286_T01 (Zea mays), 3'ss of exon 7
-----------------------------------aggaaatatttcta--------gcttttactgta-gtgctttttcttttttgctttttgcgtttcctttattattcttgctgtc----atttataatttatggtcatattcagTGCTCCAATCGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTT
                                    | || ||| |  |        | |   |  | | |   ||  |    |     | ||  |  | | | | | |  |||| |||    ||| ||||  | |   ||  ||||| |||||||| || ||||| |||||||| || || ||||||||||| |||||||| || ||   |||||| ||||||||||| ||||||||  | || || 
gtaagattatgtatgcctcatttctgttgtttgatggcaattatcttgaaatcctatgttcccatcgcatgcatttaatacgataaatatgttatgacttcctcactgtgtttgcagtctgacattgataaggtttatgcaatttcagGGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGACATTTTCAGAGTATGATGACACATCTGTCGGTCGTGTTGGTGCTCCACTA

upper sequence: GLYMA13G03280.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G77590.1 (Arabidopsis thaliana), 3'ss of exon 7
-aggaaatatttctagcttttactgtagtgctttttcttttttgctttttgcgtttcctttattattcttgctgtcatttataatttatggtcatattcagTGCTCCAATCGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTT
    |   ||  ||   | |  |  |   ||||  |  | |    | | | | |||| |   ||    || || | || ||  | | ||  ||    |||| |||||||||||||| |||||||| || |||||||||||||||||||| || ||||| ||  |||| || ||||| || |||||||||||  | || |||
gtaaacgaatccctgaatatctccttgaggcttgctactctccaatatat-cttttcgtccctttccatttctatgatctaacactgatattc---ctcagGGCTCCAATCGGTCAGGGATATGGGCTCACAGAGACTTGTGCTGGTGGAACCTTCTCGGAGTTTGAGGACACATCCGTTGGCCGTGTTGGTGCTCCACTT

upper sequence: GLYMA13G03280.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv18s0001g02810.t01 (Vitis vinifera), 3'ss of exon 8
-----aggaaatatttctagcttttactgtagtgctttttcttttttgctttttgcgtttcctttattattcttgctgtcatttataatttatggtcatattcagTGCTCCAATCGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTT
     |||||| | |  |||||   | |||  | |  |     |   |  |      ||  | ||  | || |||   |   |   | |  |  ||||| |||||||||||||| | |||||| ||||| || ||||||| |||||||||||| ||||| || ||   ||||||||||||||| || ||||||||  | || |||
atttaaggaaacact--tagctggcaatgtcctacaatc---atgcagtatgcaatattatccttcctcttgttgtaattgctctaagtgaactgtcattttcagTGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTT

upper sequence: GLYMA13G03280.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S15_17V6.1 (Physcomitrella patens), 3'ss of exon 6
---aggaaatatttctagcttttactgtagtgctttttcttttttgctttttgcgtttcctttattattcttgctgtcatt-tataatttatggtcatattcagTGCTCCAATCGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTT
   | |  || | || ||  | |||      | |   ||  | |        |    ||   ||   |   |   |  | |   |   ||||  ||     ||| ||| ||||||||||||| |||||| | ||||||||||||||||||||||||||| | ||    ||||||   || ||  | ||||  || || ||    
tccacggcatgtgtc-agtgtgtacaactcggttcactcggtctgatgccacgatgctctggtaccttaacttaagaaactgcgtgggttattttcg---gcagAGCTACAATCGGTCAAGGCTATGGTTTAACAGAGACTTGTGCTGGTGGGACATTCACCGAATGGGATGATCGCTCCGTTCGTCGTGCGGGGCCTCCGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgcgtttcctttattattcttgctgtcatttataatttatggtcatattcagTGCTCCAATCGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTT
                              atttataatttatggt  TA-rich tract