Sequence
atgc intronic sequence ATGC exonic sequence...aagaggagtgaaatgacaaataaaaaggcttaaatgtagcatatttgaaacatttgttagatacccaactctagtgatttcattctggttgttgtcccagATCACAGATTTCTGGAAGGAGGCGTTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTT
Basic information
species | Glycine max |
transcript | GLYMA13G01190.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G01190.2 (Glycine max), 3'ss of exon 6
lower sequence: AT5G57610.1 (Arabidopsis thaliana), 3'ss of exon 4
aagaggagtgaaatgacaaataaaaaggcttaaatgtagcatatttgaaacatttgttagatacccaactctagtgatttcatt--ctggttgttgtcccagATCACAGATTTCTGGAAGGAGGCGTTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTT
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-gtaaaatttcattcctttattatcaa--ttgaatttaacatatt--gatcaacgtttaagt---ctagtataattcttttactgcttttctgctgttgcagATAGAAGATTTTTGGAAAGAAGCCCTGTTATTGAGCTCATTGCATCATCCAAATGTTGTGTCGTTCTATGGGATAGTTCGTGATGGTCCTGATGGTTCTC
upper sequence: GLYMA13G01190.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv11s0052g01480.t01 (Vitis vinifera), 3'ss of exon 3
aagaggagtgaaatgacaaataaaaaggcttaaatgtagcatatttgaaa---catttg-ttagatacccaactctagtgatttcattctggttgttgtcccagATCACAGATTTCTGGAAGGAGGCGTTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTT
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---gagaataattttgcaacttcagtgttctgc-tgtagttcattaccaattacacttgcttcagtttgcattgactgtttgtctatccatcttgccgttacagATTGCGGATTTCTGGAAGGAGGCTTTGATATTGAGTTCATTACATCATCCAAATGTCGTTTCCTTTTATGGTATAGTTCGTGATGGCCCTGGTGGCTCTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19269993|gb|BM886249.1|BM886249EST: GAATAAAAGCCAGTTGTTTTGCTGGAAGGCCATCTGAAAGAGCAAGATTG ATCACAGATTTCTGGAAGGAGGCGTTGATGTTGAGTTCATTGCATCATCCA
genomic: GAATAAAAGCCAGTTGTTTTGCTGGAAGGCCATCTGAAAGAGCAAGATTGgtattatttg ... gttgtcccagATCACAGATTTCTGGAAGGAGGCGTTGATGTTGAGTTCATTGCATCATCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaaacatttgttagatacccaactctagtgatttcattctggttgttgtcccagATCACAGATTTCTGGAAGGAGGCGTTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTT
ttgtccc CT-rich tract
atttgtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagaggagtgaaatgacaaataaaaaggcttaaatgtagcatatttgaaacatttgttagatacccaactctagtgatttcattctggttgttgtcccagATCACAGATTTCTGGAAGGAGGCGTTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTT
- - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - aatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaactc