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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagaggagtgaaatgacaaataaaaaggcttaaatgtagcatatttgaaacatttgttagatacccaactctagtgatttcattctggttgttgtcccagATCACAGATTTCTGGAAGGAGGCGTTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTT

Basic information

species Glycine max
transcript GLYMA13G01190.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G01190.2 (Glycine max), 3'ss of exon 6
lower sequence: AT5G57610.1 (Arabidopsis thaliana), 3'ss of exon 4
aagaggagtgaaatgacaaataaaaaggcttaaatgtagcatatttgaaacatttgttagatacccaactctagtgatttcatt--ctggttgttgtcccagATCACAGATTTCTGGAAGGAGGCGTTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTT
   |  | |  | |     || |  |   || ||| || ||||||   | ||    |||  |   | | | || |  ||| | |   |   || |||  |||||   |||||| ||||| || ||  || | ||||| ||||||||||||||||||||||| || || ||||| || ||||||||||| || ||||||||| 
-gtaaaatttcattcctttattatcaa--ttgaatttaacatatt--gatcaacgtttaagt---ctagtataattcttttactgcttttctgctgttgcagATAGAAGATTTTTGGAAAGAAGCCCTGTTATTGAGCTCATTGCATCATCCAAATGTTGTGTCGTTCTATGGGATAGTTCGTGATGGTCCTGATGGTTCTC

upper sequence: GLYMA13G01190.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv11s0052g01480.t01 (Vitis vinifera), 3'ss of exon 3
aagaggagtgaaatgacaaataaaaaggcttaaatgtagcatatttgaaa---catttg-ttagatacccaactctagtgatttcattctggttgttgtcccagATCACAGATTTCTGGAAGGAGGCGTTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTT
     || | |  |  ||| |  |  |   |   |||||   |||   ||   || ||| ||   |   ||      ||   |  || |   |||  ||  |||||  | ||||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||| || |||||||||||||| | ||| ||||
---gagaataattttgcaacttcagtgttctgc-tgtagttcattaccaattacacttgcttcagtttgcattgactgtttgtctatccatcttgccgttacagATTGCGGATTTCTGGAAGGAGGCTTTGATATTGAGTTCATTACATCATCCAAATGTCGTTTCCTTTTATGGTATAGTTCGTGATGGCCCTGGTGGCTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269993|gb|BM886249.1|BM886249
EST:     GAATAAAAGCCAGTTGTTTTGCTGGAAGGCCATCTGAAAGAGCAAGATTG                         ATCACAGATTTCTGGAAGGAGGCGTTGATGTTGAGTTCATTGCATCATCCA
genomic: GAATAAAAGCCAGTTGTTTTGCTGGAAGGCCATCTGAAAGAGCAAGATTGgtattatttg ... gttgtcccagATCACAGATTTCTGGAAGGAGGCGTTGATGTTGAGTTCATTGCATCATCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaacatttgttagatacccaactctagtgatttcattctggttgttgtcccagATCACAGATTTCTGGAAGGAGGCGTTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTT
                                              ttgtccc  CT-rich tract
      atttgtta  TA-rich tract