1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaaattatatatagttacttatttttatggtttaacggagtatcaggaaacattaattagagtatatgagaaaatgtttaatttattttcctaaatgttataatagGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAG
species | Glycine max |
transcript | GLYMA13G00950.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTTGTTGCTTCTCTACGAAG GAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGEST: gi|7795291|gb|AW780688.1|AW780688
genomic: GTTTGTTGCTTCTCTACGAAGgtaaaattat ... gttataatagGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAG
EST: GAGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGAAG GAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGEST: gi|37995737|gb|CF807326.1|CF807326
genomic: GAGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGAAGgtaaaattat ... gttataatagGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAG
EST: GAGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGAAG GAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGEST: gi|17021856|gb|BM092890.1|BM092890
genomic: GAGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGAAGgtaaaattat ... gttataatagGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAG
EST: GAGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGAAG GAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGEST: gi|6481417|gb|AW200688.1|AW200688
genomic: GAGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGAAGgtaaaattat ... gttataatagGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAG
EST: GAGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGAAG GAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAG
genomic: GAGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGAAGgtaaaattat ... gttataatagGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAG
attaattagagtatatgagaaaatgtttaatttattttcctaaatgttataatagGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAG
tcctaaa putative branch site (score: 2)
agaaaatgtttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaattatatatagttacttatttttatggtttaacggagtatcaggaaacattaattagagtatatgagaaaatgtttaatttattttcctaaatgttataatagGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG