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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttttctagtttagccttttagcattacgaaatgttaacatgcaaattttagagttgaagttcttgatgatgtgtcttcctttccttcagGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCGCGCGTATTGCGATATAAG

Basic information

species Glycine max
transcript GLYMA12G37070.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G37070.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G061681_T02 (Zea mays), 3'ss of exon 6
gtaagatttttctagtttagccttttagcattacgaaatgttaacatg-ca-aattttagagttgaagt--tcttgatgat-gtgtcttcctttccttcagGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCGCGCGTATTGCGATATAAG
  || |       |      | |    || | || | |   | | ||| || |||||   |  | || |  || ||||  |   |    | || | ||||||| |||||||| ||||||||| ||||||| || || ||||| |||||||||||||| ||||||||||| || ||  | |||||||| 
-caacacagcaggaaagagtcttgcctgcttgactagagaatgaaatggcacaatttggtacctaaaatggtcctgatttttaagataacattcctttcagGAGAGAGATAATATGCAGAAGACAGAGTTTTTGAAGGCATTATCAGATATGTGGAAGGATTTTGATTCCCGAGTTCTTCGATATAAA

upper sequence: GLYMA12G37070.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G71410.1 (Arabidopsis thaliana), 3'ss of exon 6
-----------------gtaagatttttctagtttagcc--ttttagcattacgaaatgttaacatgcaaatttt-agagttgaagttcttgatgatgtg-tcttcctttccttcagGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCGCGCGTATTGCGATATAAG
                   |  ||| ||  ||     |   | |||| | |   | ||| |   |     || |  | | ||||    |||   |      | |||  ||  | |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||||
gtacgtgtatatgcttccaataattgtttcagacagactgttcttagaagtcttagatgatggaaaatgtatctccacatttgataaccttttcggaacaattttctctttatccagGAAAGAGATAACATGCAAAAGTCCGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGATTTTGATTCCCGTGTATTACGGTATAAG

upper sequence: GLYMA12G37070.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagatttttctagtttagccttttagcattacgaaatgttaacatgcaaattttagagttg-aagttcttgatgatgtgtcttcctttccttcagGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCGCGCGTATTGCGATATAAG
||| |  | ||  | ||||  | |        || | | || |   ||  | ||  | |  |  ||   |||   |   | | ||  |||  | ||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || ||||| || ||||||
gtatgtatattaaattttaatcatcgtttcagac-agacgtgattttgatagttggaaacatataaaacctttggggcatttttttatttattgcagGAGAGAGACAACATGCAGAAGTCTGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGACTTTGATTCTCGTGTATTACGGTATAAG

upper sequence: GLYMA12G37070.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 3'ss of exon 6
------------------------gtaagatttttctagtttagcctttt-----agcatt----acgaaatgttaacatgcaaattt--tagagttgaagttcttgatgatgtgtcttcctttccttcagGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCGCGCGTATTGCGATATAAG
                        || |  |  || |    ||   ||       | ||||    | || | |  || ||   || ||  | |   || | | ||   | |    | ||  |||  | |||||||| ||||||||||||||||| |||||  |||||||||| || |||||||||||||||||||| || || || ||||| ||||||
gtatgaagttatatttctttggatgtcacctgcttttgacataagattactaaaaaacattgtgcatgagaaggaaaaataagaagttggtggcaatggaat-ctgagtaacaaattttatttttttgcagGAAAGGGATAACATGCAGAAGTCTGAGTTTCTAAAAGCATTATCGGATATGTGGAAAGATTTTGACTCTCGTGTTTTGCGTTATAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacatgcaaattttagagttgaagttcttgatgatgtgtcttcctttccttcagGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCGCGCGTATTGCGATATAAG
                                   tgtgtcttcctttcct  CT-rich tract
        aaattttaga  TA-rich tract