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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggaacaacagacgaacagttttcatatattcatgcctgcatatgtaaaatggattatgtgtggagatttgtgcctgtgcttgcatataattgctgcctccatcttaaaaatctgaagtattgcttatggctgagtttctgcagATGTTCCTGAAGGTTGTGTTATCATAAGAGAACACATTCCAATTACAAATCTCTTTACTTGCTTATGGTTCAATGAAGTTGATCGCTTCACTTCCAGGGA

Basic information

species Glycine max
transcript GLYMA12G35300.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35300.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os05g45490.1 (Oryza sativa), 3'ss of exon 7
gtaggaacaacagacgaacagttttcatatattcatgcctgcatatgtaaaatggattatgtgtggagatttgtgcctgtgcttgcatataattgctgcctccatcttaaaaatctgaagtattgcttatggctgagtttctgcagATGTTCCTGAAGGTTGTGTTATCATAAGAGAACACATTCCAATTACAAATCTCTTTACTTGCTTATGGTTCAATGAAGTTGATCGCTTCACTTCCAGGGA
                                                              ||      |         |  ||   | ||  | |   |   | |   | || | || | |   || ||  |  ||||    |||||| |||||||||||||| ||||| ||||| |||||||| || || |||||||| || ||| | ||||||||||||||||| || ||||| ||||||||
--------------------------------------------------------------gtcagtgatctcattgaagtatggcgaaaacagttcagttactttctgagattttaactgtcctttttgcattggttt----agATGTCCCTGAAGGTTGTGTCATCATCAGAGAGCACATTCCCATCACGAATCTCTTCACATGCCTTTGGTTCAATGAAGTTGACCGTTTCACCTCCAGGGA

upper sequence: GLYMA12G35300.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G421791_T01 (Zea mays), 3'ss of exon 7
gtaggaacaacagacgaacagttttcatatattcatgcctgcatatgtaaaatggattatgtgtggagatttgtgcctgtgcttgcatataattgctgcctccatcttaaaaatctgaagtattgcttatggctgagtttctgcagATGTTCCTGAAGGTTGTGTTATCATAAGAGAACACATTCCAATTACAAATCTCTTTACTTGCTTATGGTTCAATGAAGTTGATCGCTTCACTTCCAGGGA
                                              || |      | ||  |   |   |  |  |   |||| ||  |  ||||||     ||| |||    ||||       ||| ||  ||      ||||||||| |||||||| ||||| ||||| ||||||||||| || || || || ||||| || |||||||||||||||||||||||||||||||| ||||||||
----------------------------------------------gtcagtgaactcatcagattatggtaataacgtcgctt-cagtttcttgctggaa--atcctaatg--ctgagcggccccttttgcttgg---catgcagATGTCCCTGAAGGCTGTGTGATCATCAGAGAACACATCCCCATCACGAACCTCTTCACGTGCTTATGGTTCAATGAAGTTGATCGCTTCACCTCCAGGGA

upper sequence: GLYMA12G35300.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G044866_T01 (Zea mays), 3'ss of exon 7
gtaggaacaacagacgaacagttttcatatattcatgcctgcatatgtaaaatggattatgtgtggagatttgtgcctgtgcttgcatataattgctgcct--ccatcttaaaaatctgaagtattgcttatggctgagtttctgcagATGTTCCTGAAGGTTGTGTTATCATAAGAGAACACATTCCAATTACAAATCTCTTTACTTGCTTATGGTTCAATGAAGTTGATCGCTTCACTTCCAGGGA
                                                                          | | ||| |  |||   ||| | |      |   |      | |     |   |   | |||  |  |  |||||||| || ||||| ||||| ||||| ||||| ||||| || || || || || || || ||| ||||||||||||| |||||||||||||| ||||||||
--------------------------------------------------------------------------gtcagtgatctcatcagattacggtaaaagcgcttcggtttttttgctgaaatccctttgctccgcgt--gcagATGTCCCCGAAGGCTGTGTGATCATCAGAGAGCACATCCCCATCACGAACCTGTTCACGTGCGTATGGTTCAATGAGGTTGATCGCTTCACCTCCAGGGA

upper sequence: GLYMA12G35300.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G53040.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaggaacaacagacgaacagttttcatatattcatgcctgcatatgtaaaatggattatgtgtggagatttgtgcctgtgcttgcatataattgctgcctccatcttaaaaatctgaagtattgcttatggctgagtttctgcagATGTTCCTGAAGGTTGTGTTATCATAAGAGAACACATTCCAATTACAAATCTCTTTACTTGCTTATGGTTCAATGAAGTTGATCGCTTCACTTCCAGGGA
                                                        | |||  |  |    | ||    || |    |   |    |  || |   | ||  |||  || |    | | |      ||||  |||||||| ||||||||||||   ||||||||||||||||| || || ||||| || || || ||  |||||||||| || || ||||| || ||||| || ||
-------------------------------------------------------gtaatggttttaaccatatgaggatgataaagttccacaattttcttctgttcaatgatcacaattgaaacatttcaaatcgtttg-gcagATGTCCCTGAAGGTTGTACCATCATAAGAGAACACATACCGATCACAAACCTTTTCACATGTGTATGGTTCAACGAGGTAGATCGGTTTACTTCAAGAGA

upper sequence: GLYMA12G35300.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv19s0014g02710.t01 (Vitis vinifera), 3'ss of exon 7
gtaggaacaacagacgaacagttttcatatattcatgcctgcatatgtaaaatggattatgtgtggagatttgtgcctgtgcttgcatataattgctgcctccatcttaaaaatctgaagtattgctt-atggctgagtttctgcagATGTTCCTGAAGGTTGTGTTATCATAAGAGAACACATTCCAATTACAAATCTCTTTACTTGCTTATGGTTCAATGAAGTTGATCGCTTCACTTCCAGGGA
                                                         || |||||  |||   |   |||  |||  | |  ||  |   |  ||||| ||| |  |   | | |||| ||| ||||||| |||||||||||||||||||||| || ||  |||  ||||| || || ||||||||||| ||||| ||  ||||||||||||||||||||||||| |||||||||||
--------------------------------------------------------gtaagtgtgt-gatccttatgtgta-ttgtgtgtg-ttatt--ttgtatcttgaaattgaggtttttggctttatgtctgagttgctgcagATGTTCCTGAAGGTTGCGTGATTGTAAAGGAACATATCCCCATTACAAATCTTTTTACCTGTCTATGGTTCAATGAAGTTGATCGCTTTACTTCCAGGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298190347|gb|HO032468.1|HO032468
EST:     CCACGACGGTTTAACTCATTATTCCAGGGCTAAGCTTCCTATAACTAGTG                         ATGTTCCTGAAGGTTGTGTTATCATAAGAGAACACATTCCAATTACAAATC
genomic: CCACGACGGTTTAACTCATTATTCCAGGGCTAAGCTTCCTATAACTAGTGgtaggaacaa ... gtttctgcagATGTTCCTGAAGGTTGTGTTATCATAAGAGAACACATTCCAATTACAAATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgctgcctccatcttaaaaatctgaagtattgcttatggctgagtttctgcagATGTTCCTGAAGGTTGTGTTATCATAAGAGAACACATTCCAATTACAAATCTCTTTACTTGCTTATGGTTCAATGAAGTTGATCGCTTCACTTCCAGGGA
                                              tttctgc  CT-rich tract
            atcttaaaaat  TA-rich tract