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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtctagtgataatgctgaatgattatgtctatttcttctagtcatttagtgttgattaggatgcttcttacacatagttgttgatgctgaatcaaacagGTCGCCGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCAATTCGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGGA

Basic information

species Glycine max
transcript GLYMA12G34410.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295197|gb|FG986916.1|FG986916
EST:     GAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGG                         GTCACCGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCA
genomic: GAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGgtatgtcttt ... aatcaaacagGTCGCCGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagtgttgattaggatgcttcttacacatagttgttgatgctgaatcaaacagGTCGCCGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCAATTCGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGGA
       ttgatta  TA-rich tract