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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcacagatacatttgaaatctttattggtaatgaatttggtgagtaaatttcaattgatcttgaatgtccgtgtaatgaattcttaattgctgcagAGTTTTGGAAACAGATTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCAGAGACAAACTATATAACATTCGGGAACGTGCTCGCCATTTATT

Basic information

species Glycine max
transcript GLYMA12G33820.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G33820.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G473001_T01 (Zea mays), 3'ss of exon 6
gtatgtcacagatacatttgaaatctttattggtaatga-atttggtgagtaaatttcaattgatcttgaatgtccgtgtaatgaattcttaattgctgcagAGTTTTGGAAACAGATTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCAGAGACAAACTATATAACATTCGGGAACGTGCTCGCCATTTATT
|||  |  |||  ||||    |    || ||  | |||  || | || | ||      | ||    | | ||     ||   |   ||| |   | ||| ||||||||||||  || |||||||||||||||||||||| || || ||  |||||||||| || ||||| || |||| ||| |||||  | ||  |  | ||
gtagctaccagtgacatcattaggtcttcttaatgatggcatgttgttattatgccatattt---ttggcattgtaatgatttttcttcatttctactgtagAGTTTTGGAAGAAGGTTCCTCCAAATGAGCCATATCGGGTGATACTGAGTGATGTCAGGGATAAACTGTACAACACTCGTGAACGGTCACGAGAGCTTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtaaatttcaattgatcttgaatgtccgtgtaatgaattcttaattgctgcagAGTTTTGGAAACAGATTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCAGAGACAAACTATATAACATTCGGGAACGTGCTCGCCATTTATT
                                        tcttaat  putative branch site (score: 3)
                                taatgaattcttaatt  TA-rich tract