Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggctgaacatttaatgcctcctttttctggaccttttttttcagtccatcctccttttgctaattgagtgctaaaaaatagatcatctcgatactctcttttcctaacttcttttatctgtattgtgtttagTGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGCGGTGCATCTATGATTTTAAGGCCACAGGACTACCTGATACAGCAGAATTCTATA

Basic information

species Glycine max
transcript GLYMA12G30430.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405212|gb|EV275026.1|EV275026
EST:     GTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACTTAATCACCTCCAG                         TGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGCGGTGCATC
genomic: GTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACTTAATCACCTCCAGgttaggctga ... ttgtgtttagTGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGCGGTGCATC
EST: gi|19453281|gb|BM954691.1|BM954691
EST:     GTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACTTAATCACCTCCAG                         TGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGCGGTGCATC
genomic: GTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACTTAATCACCTCCAGgttaggctga ... ttgtgtttagTGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGCGGTGCATC
EST: gi|151405324|gb|EV275138.1|EV275138
EST:     GTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACTTAATCACCTCCAG                         TGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGCGGTGCATC
genomic: GTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACTTAATCACCTCCAGgttaggctga ... ttgtgtttagTGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGCGGTGCATC
EST: gi|58021743|gb|CX708484.1|CX708484
EST:     GTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACTTAATCACCTCCAG                         TGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGCGGTGCATC
genomic: GTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACTTAATCACCTCCAGgttaggctga ... ttgtgtttagTGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGCGGTGCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagatcatctcgatactctcttttcctaacttcttttatctgtattgtgtttagTGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGCGGTGCATCTATGATTTTAAGGCCACAGGACTACCTGATACAGCAGAATTCTATA
                        tcctaac  putative branch site (score: 1)
                               ttcttttat  TA-rich tract