1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgacttaacctaactgaaagatgatacaatatgtagcaaatatacctgtgatgccatctgttactatttgttgggctcaaatgtatgttactcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAGTGTTG
species | Glycine max |
transcript | GLYMA12G28730.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTT GTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAEST: gi|151408852|gb|EV278660.1|EV278660
genomic: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
EST: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTT GTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAEST: gi|193630915|gb|FK585070.1|FK585070
genomic: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
EST: TGTCATCGTGACATCAAACCTCAGAACCTACTT GTGAACCCACACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAEST: gi|151408377|gb|EV278185.1|EV278185
genomic: TGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
EST: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTT GTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAEST: gi|193548282|gb|FK505275.1|FK505275
genomic: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
EST: TAACTGCTATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTT GTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAEST: gi|192295002|gb|FG986721.1|FG986721
genomic: TAACTGC-ATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
EST: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTT GTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAEST: gi|37995772|gb|CF807361.1|CF807361
genomic: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
EST: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTT GTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
genomic: ATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatt ... ctcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAA
ctgtgatgccatctgttactatttgttgggctcaaatgtatgttactcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAGTGTTG
ttactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacttaacctaactgaaagatgatacaatatgtagcaaatatacctgtgatgccatctgttactatttgttgggctcaaatgtatgttactcatgtcagGTGAACCCGCACACTCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAGTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA