1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtggtcaacaaagaaaacatgtcattgatggctttgttcacttgaaacatcatgcacatatcattttccaggctaaccaaagcaattgatggatgattagGCAGCAATGAACACTGAGGGAAAAGTTGGGTGGGAAGAAATTGTGGATTCTCACCTCCAAGGAAACTTTGATGTCAAGGAACTCAATAAAGTGGCAGCAC
species | Glycine max |
transcript | GLYMA12G16650.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAATCCTCAGCAGGGTCTTATGGAATACGTAGAGCTT GCAGCAATGAACACTGAGGGAAAAGTTGGGTGGGAAGAAATTGTGGATTCT
genomic: GAATCCTCAGCAGGGTCTTATGGAATACGTAGAGCTTgtaagatctc ... ggatgattagGCAGCAATGAACACTGAGGGAAAAGTTGGGTGGGAAGAAATTGTGGATTCT
aacatcatgcacatatcattttccaggctaaccaaagcaattgatggatgattagGCAGCAATGAACACTGAGGGAAAAGTTGGGTGGGAAGAAATTGTGGATTCTCACCTCCAAGGAAACTTTGATGTCAAGGAACTCAATAAAGTGGCAGCAC
atatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtcaacaaagaaaacatgtcattgatggctttgttcacttgaaacatcatgcacatatcattttccaggctaaccaaagcaattgatggatgattagGCAGCAATGAACACTGAGGGAAAAGTTGGGTGGGAAGAAATTGTGGATTCTCACCTCCAAGGAAACTTTGATGTCAAGGAACTCAATAAAGTGGCAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - -aaagaaa
- - - - - - - - acatgtc
- - - - - - - - - - - - -tgatggc
- - - - - - - - - - - - - - - - - - - cacttga
- - - - - - - - - - - - - - - - - - - - - - - - - catgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaacca