1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtatttactaatccatctttttttttctgttgtcaattatgtttcagtaaaatctatttggaatttaactttttaatgtgtttagtctgttcaatttattaattttttgattttggattgaatagGAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAAGACATGGAGGATTTTGGTGGTTTTGCAACTCTTAAGTCTCAGGGTGATT
species | Glycine max |
transcript | GLYMA12G14000.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCTTGATATGGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAA GAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAGEST: gi|193452480|gb|FK416716.1|FK416716
genomic: TTCTTGATATGGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAAgtatgtattt ... gattgaatagGAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAA
EST: TTCTTGATATGGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAA GAAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAEST: gi|193471126|gb|FK436003.1|FK436003
genomic: TTCTTGATATGGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAAgtatgtattt ... gattgaatagGAA-CCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGA
EST: CTGATGAAGAAGAGGATGAAGAA GAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAAEST: gi|298193864|gb|HO040512.1|HO040512
genomic: CTGATGAAGAAGAGGATGAAGAAgtatgtattt ... gattgaatagGAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAA
EST: TTCTTGATATGGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAA GAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAAEST: gi|193578161|gb|FK533363.1|FK533363
genomic: TTCTTGATATGGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAAgtatgtattt ... gattgaatagGAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAA
EST: GGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAA GAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAAEST: gi|208058749|gb|GD858221.1|GD858221
genomic: GGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAAgtatgtattt ... gattgaatagGAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAA
EST: TTCTTGATATGGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAA GAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAAEST: gi|193732351|gb|FK668775.1|FK668775
genomic: TTCTTGATATGGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAAgtatgtattt ... gattgaatagGAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAA
EST: GGAGAAACTTCAAA-TGCTGATGAAGAAGAGGATGAAGAA GAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAAEST: gi|193584547|gb|FK543327.1|FK543327
genomic: GGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAAgtatgtattt ... gattgaatagGAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAA
EST: GGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAA GAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAAEST: gi|193393421|gb|FK358825.1|FK358825
genomic: GGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAAgtatgtattt ... gattgaatagGAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAA
EST: TTCTTGATATGGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAA GAACCAGAAGTAGAATATGTAGAAGGTTATGATG
genomic: TTCTTGATATGGAGAAACTTCAAATTGCTGATGAAGAAGAGGATGAAGAAgtatgtattt ... gattgaatagGAACCAGAAGTAGAATATGTAGAAGGTTATGATG
ttttaatgtgtttagtctgttcaatttattaattttttgattttggattgaatagGAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAAGACATGGAGGATTTTGGTGGTTTTGCAACTCTTAAGTCTCAGGGTGATT
ttcaatttattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatttactaatccatctttttttttctgttgtcaattatgtttcagtaaaatctatttggaatttaactttttaatgtgtttagtctgttcaatttattaattttttgattttggattgaatagGAACCAGAAGTAGAATATGTAGAAGGTTATGATGAACTTGAAGAGGAAGAAGACATGGAGGATTTTGGTGGTTTTGCAACTCTTAAGTCTCAGGGTGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG