1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taaatgtgattgaattgaatctctacacttgttgaacctctcaggtgtaagtttgatgcatctagcttcacacactaatataagcttttgtgagttgcagTGATGGGGAAAATCACCACTAAAGTTGACGTTTTCAGCTACGGTGTGGTCTTGATGGAACTTCTGACTGGACTAATGGCTCTTGACGAGAGCCGGTCGGA
species | Glycine max |
transcript | GLYMA12G09960.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCAACAAAGCTTGCAGGAACATTTGGTTATCTTGCCCCTGAATATGCAG TGATGGGGAAAATCACCACTAAAGTTGACGTTTTCAGCT-CGGTGTGGTCTEST: gi|51336412|gb|CO980278.1|CO980278
genomic: GGCAACAAAGCTTGCAGGAACATTTGGTTATCTTGCCCCTGAATATGCAGgtaagcatat ... tgagttgcagTGATGGGGAAAATCACCACTAAAGTTGACGTTTTCAGCTACGGTGTGGTCT
EST: GGCAACAAAGCTTGCAGGAACATTTGGTTATCTTGCCCCTGAATATGCAG TGATGGGGAAAATCACCACTAAAGTTGACGTTTTCAGCTACGGTGTGGTCT
genomic: GGCAACAAAGCTTGCAGGAACATTTGGTTATCTTGCCCCTGAATATGCAGgtaagcatat ... tgagttgcagTGATGGGGAAAATCACCACTAAAGTTGACGTTTTCAGCTACGGTGTGGTCT
tgtaagtttgatgcatctagcttcacacactaatataagcttttgtgagttgcagTGATGGGGAAAATCACCACTAAAGTTGACGTTTTCAGCTACGGTGTGGTCTTGATGGAACTTCTGACTGGACTAATGGCTCTTGACGAGAGCCGGTCGGA
cactaat putative branch site (score: 2)
cttttgt putative PPT
taatataagctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaatgtgattgaattgaatctctacacttgttgaacctctcaggtgtaagtttgatgcatctagcttcacacactaatataagcttttgtgagttgcagTGATGGGGAAAATCACCACTAAAGTTGACGTTTTCAGCTACGGTGTGGTCTTGATGGAACTTCTGACTGGACTAATGGCTCTTGACGAGAGCCGGTCGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - -gtgattg
- - - - - - - - - - ctctaca
- - - - - - - - - - - - - -cttgttg
- - - - - - - - - - - - - - - - - - cctctca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacacac