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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataataaaacatgatcagctagttttttcttgttcttttaaatacagaaataactaagctttaatttggttattgttgttatatctccaaaacaatgtgtctcgtgctttagGTACAGCGAAAGGTTGAATGGGAGGAGAAAGAATCGTTTGTCCGTGAACTTTATGGACTTGAGTTTAATGATCCTAATGTAACATTTGCTCTGTGTTGTG

Basic information

species Glycine max
transcript GLYMA12G08280.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08280.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g02510.t01 (Vitis vinifera), 3'ss of exon 8
gtaaataataaaacatgatcagctagttttttcttgttcttttaaatacagaaataactaagctttaatttggttattgttgttatatctccaaaacaatgtgtctcgtgctttagGTACAGCGAAAGGTTGAATGGGAGGAGAAAGAATCGTTTGTCCGTGAACTTTATGGACTTGAGTTTAATGATCCTAATGTAACATTTGCTCTGTGTTGTG
                     |   | |||  ||| | ||||  ||    | |  | ||   |||  |||  ||   |    || |||| | ||||||   |||   ||    ||||   |  | ||||  |||  ||| || |||||| |  |  | || || ||||||||  |  |        |||||||||| |||||||||||||||||||
---------------------gtatggtttaacttatactttgcaa----ggatcatctgtccttccatt--gtcgataagattgtatc-ctaaaaca---tgttctgt-tggtagGCTTACTGGAAGGGAGAAAAGGACGATAAAGAAGCCATCATTCGCGAGCTTTATGGGGTCCAACCATTCAATCCTAATGTCACATTTGCTCTGTGTTGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttaatttggttattgttgttatatctccaaaacaatgtgtctcgtgctttagGTACAGCGAAAGGTTGAATGGGAGGAGAAAGAATCGTTTGTCCGTGAACTTTATGGACTTGAGTTTAATGATCCTAATGTAACATTTGCTCTGTGTTGTG
 ctttaat  putative branch site (score: 4)
            ttattgttgttatat  TA-rich tract