Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagtgatttgatcctcatcattaataagcacggtatgttatatattgccaacttgaatttggcttgtttccatattctggaattttcatttatttttcagGTTCGATATCACAGCAGGAAAAAACTAGCAGAACAGCGACCACGTATTAAGGGACAATTTGTCAGACGAATAGTGTATG

Basic information

species Glycine max
transcript GLYMA12G07860.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07860.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv06s0004g03660.t01 (Vitis vinifera), 3'ss of exon 1
cagtgatttgatcctcatcattaataagcacggtatgttatatattgcca--acttgaatttggcttgtttccatattctggaatttt-cat---ttatttttcagGTTCGATATCACAGCAGGAAAAAACTAGCAGAACAGCGACCACGTATTAAGGGACAATTTGTCAGACGAATAGTGTATG
     |  ||||  || |  || |    | | ||| ||  | |  || ||  | ||| ||||   | |  || | |   |  | |||| |||   |||||   |||||||| || || |||||||| ||||| |||||||| ||||||||||||   |||||||||||| | | ||  ||     
---gaaactgattttc-tagttgactcac-ctgtacgtcct-tgctgtcattatttgtatttctatggagtcaacagaattaagtttttcatgtcttattcgccagGTTCGTTACCAAAGCAGGAAGAAACTGGCAGAACAACGACCACGTATTCGAGGACAATTTGTCCGGCAAAATGT-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193511202|gb|FK468471.1|FK468471
EST:     CCTTGACCAAATTTCGCCTAAAGAGAAAAGAAAGATGCTTTGAGAAGAGG                         GTTCGATATCACAGCAGGAAAAAACTAGCAGAACAGCGACCACGTATTAAG
genomic: CCTTGACCAAATTTCGCCTAAAGAGAAAAGAAAGATGCTTTGAGAAGAGGgtaatctatt ... tatttttcagGTTCGATATCACAGCAGGAAAAAACTAGCAGAACAGCGACCACGTATTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccaacttgaatttggcttgtttccatattctggaattttcatttatttttcagGTTCGATATCACAGCAGGAAAAAACTAGCAGAACAGCGACCACGTATTAAGGGACAATTTGTCAGACGAATAGTGTATG
                                     ttttcatttatttttc  CT-rich tract
                                   aattttcatttatttt  TA-rich tract