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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttattcctttcttatcaatttaaagaatattgataatttggctgtagctctgttaatctgtatttaatttgttattactttaaccaatcccgtgcccagtttgtttacttccctaataatttatcctctgttctcctgatgacagattcctgatcttttcagGTTGAGAAAATTGTGTTTGTTGTGTTTTTCTCTGGGGAGCAAGCAAGAACCAAGATTCTGAAAATTTGTGATGCATTTGGTGCAAATTGTTACCCTGTTC

Basic information

species Glycine max
transcript GLYMA12G07740.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07740.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 6
gttttattcctttcttatcaatttaaagaatattgataatttggctgtagctctgttaatctgtatttaatttgttattactttaaccaatcccgtgcccagtttgtttacttccctaataatttatcctctgttctcctgatgacagattcctgatcttttcagGTTGAGAAAATTGTGTTTGTTGTGTTTTTCTCTGGGGAGCAAGCAAGAACCAAGATTCTGAAAATTTGTGATGCATTTGGTGCAAATTGTTACCCTGTTC
                                                                 ||   |  ||   |  | |     ||  | |  |   |  |     |    | |   |||    |   |  | |||||  ||      | ||| || ||| |||||||||  || || || ||||| ||||| |||||||| |||| ||| ||||| |||||||||||||| ||||||||||||||||| || ||||| |
-----------------------------------------------------------------ttagctcagtctatgttctggttcatttctttgcttttcagaaacttctattgaatttttgagttaaatggtactgattccactggttttatcgttgcagATTGAGAAAACAGTTTTCGTGGTGTTCTTCTCAGGGGAGCAGGCAAAAACAAAGATACTGAAAATTTGTGAAGCATTTGGTGCAAATTGCTATCCTGTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttccctaataatttatcctctgttctcctgatgacagattcctgatcttttcagGTTGAGAAAATTGTGTTTGTTGTGTTTTTCTCTGGGGAGCAAGCAAGAACCAAGATTCTGAAAATTTGTGATGCATTTGGTGCAAATTGTTACCCTGTTC
                                        tcctgat  putative branch site (score: 3)
                                       ttcctgatcttttc  CT-rich tract
      taataatttatcct  TA-rich tract