Sequence
atgc intronic sequence ATGC exonic sequencegttatctctctttttcgaaatacaaaagttgatagcctataccattaccatctgttgattttacaagttgtaattttgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTG
Basic information
species | Glycine max |
transcript | GLYMA12G06980.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 3'ss of exon 6
gttatctctctttttcgaaat--acaaaagttgatagcctataccattaccat----ctgttgattttacaagttgtaattttgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTG
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-----------gtttgggatttgacttcattttattcctttaaccaggatcataaatttctcaatttattaaattatgttaatgtttaacagGATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193540711|gb|FK494361.1|FK494361EST: GTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAG GATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCC
genomic: GTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAGgttatctctc ... tgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atagcctataccattaccatctgttgattttacaagttgtaattttgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTG
ttttgat putative branch site (score: 4)
ttgtaattttgatt TA-rich tract