1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gctgcagtcatgttccaagaggaaataaatggaaaacttcgtaaattgattttgtactttaaatcattatacagtatcataacaaacatctgttatgcagGACGGACATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTACCTATTCTTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAAC
species | Glycine max |
transcript | GLYMA12G06920.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGCTAGACAAAGTGGAGCTGGAATCTCTTGGCTTTTTCCATTTGTG GACGGACATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTAEST: gi|10233625|gb|BE802513.1|BE802513
genomic: TTGCTGCTAGACAAAGTGGAGCTGGAATCTCTTGGCTTTTTCCATTTGTGgtaagaaaga ... tgttatgcagGACGGACATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTA
EST: TTGCTGCTAGACAAAGTGGAGCTGGAATCTCTTGGCTTTTTCCATTTGTG GACGGACATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTAEST: gi|7926267|gb|AW832293.1|AW832293
genomic: TTGCTGCTAGACAAAGTGGAGCTGGAATCTCTTGGCTTTTTCCATTTGTGgtaagaaaga ... tgttatgcagGACGGACATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTA
EST: TGGAGCTGGAATCTCTTGGCTTTTTCCATTTGTG GACGGACATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTA
genomic: TGGAGCTGGAATCTCTTGGCTTTTTCCATTTGTGgtaagaaaga ... tgttatgcagGACGGACATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTA
ttgattttgtactttaaatcattatacagtatcataacaaacatctgttatgcagGACGGACATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTACCTATTCTTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAAC
tcataac putative branch site (score: 2)
tttgtactttaaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgcagtcatgttccaagaggaaataaatggaaaacttcgtaaattgattttgtactttaaatcattatacagtatcataacaaacatctgttatgcagGACGGACATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTACCTATTCTTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAAC
gctgcag
- - - - catgttc
- - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - ggaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaacat