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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaagctatatggtaggaactggggttgtcatttagtgtgcctgtttgtacttgaacacacttaatcattcctgtttctagcatcattggcatacttttgtataaattatttcatatttatatcgaataaaatattctttagcttttgtatctaaaaatcattattcagGTATCCTTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAATTCTGACATGTTACCTGAGCATCAAGTAACCAGTTTAGGTAGCCATTTTGAAAAC

Basic information

species Glycine max
transcript GLYMA12G06680.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346057|gb|BM890937.1|BM890937
EST:     GCTGCACATTCTCCCGGTCCTAAAGCTGACATAACTCAGCCTGTAATAAG                         GTATCCTTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAATTCTGA
genomic: GCTGCACATTCTCCCGGTCCTAAAGCTGACATAACTCAGCCTGTAATAAGgtaatgaagc ... cattattcagGTATCCTTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAATTCTGA
EST: gi|15815916|gb|BI788191.1|BI788191
EST:     GCTGCACATTCTCCCGGTCCTAAAGCTGACATAACTCAGCCTGTAATAAG                         GTATCCTTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAATTCTGA
genomic: GCTGCACATTCTCCCGGTCCTAAAGCTGACATAACTCAGCCTGTAATAAGgtaatgaagc ... cattattcagGTATCCTTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAATTCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttatatcgaataaaatattctttagcttttgtatctaaaaatcattattcagGTATCCTTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAATTCTGACATGTTACCTGAGCATCAAGTAACCAGTTTAGGTAGCCATTTTGAAAAC
                                   atctaaa  putative branch site (score: 3)
           aataaaatattcttta  TA-rich tract