1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagttctcttcactgcttatgttactcttataatgtaccttagatcatttgtcatataaaatacgttctacgcgacagCGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGATGAAATTTTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACT
species | Glycine max |
transcript | GLYMA12G06450.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCGGGTGATACAG CGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGATEST: gi|208030488|gb|GD828400.1|GD828400
genomic: GCCGGGTGATACAGgtaagttctc ... tacgcgacagCGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGAT
EST: GCCGGGTGATACAG CGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGATEST: gi|193708510|gb|FK644958.1|FK644958
genomic: GCCGGGTGATACAGgtaagttctc ... tacgcgacagCGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGAT
EST: ATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGCCGGGTGATACAG CGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGAT
genomic: ATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGCCGGGTGATACAGgtaagttctc ... tacgcgacagCGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGAT
actcttataatgtaccttagatcatttgtcatataaaatacgttctacgcgacagCGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGATGAAATTTTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACT
atttgtcatataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctcttcactgcttatgttactcttataatgtaccttagatcatttgtcatataaaatacgttctacgcgacagCGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGATGAAATTTTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA