1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cctaatattcctttactacctaaatgtgatattgtttgctatatttcctatacgtgtgggttgatctcttgcttttgatttcttctctccttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAACGTTCTTCTATCATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATG
species | Glycine max |
transcript | GLYMA12G06430.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAG CATGTGCTGGAACATGGGAAGCCTCATGAACGTTCTTCTATCATAAAGGAAEST: gi|193482748|gb|FK446587.1|FK446587
genomic: GAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGgtttctaatt ... ttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAACGTTCTTCTATCATAAAGGAA
EST: GAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAG CATGTGCTGGAACATGGGAAGCCTCATGAACGTTCTTCTATCATAAAGGAAEST: gi|105633593|gb|DW246956.1|DW246956
genomic: GAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGgtttctaatt ... ttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAACGTTCTTCTATCATAAAGGAA
EST: GAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAG CATGTGCTGGAACATGGGAAGCCTCATGAACGTTCTTCTATCATAAAGGAA
genomic: GAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGgtttctaatt ... ttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAACGTTCTTCTATCATAAAGGAA
tcctatacgtgtgggttgatctcttgcttttgatttcttctctccttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAACGTTCTTCTATCATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATG
tctcttgcttttgatt CT-rich tract
ttttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctaatattcctttactacctaaatgtgatattgtttgctatatttcctatacgtgtgggttgatctcttgcttttgatttcttctctccttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAACGTTCTTCTATCATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtggg