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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttgtttctactttcattctttattttccctgcttcttttataagcctaagtgttgcgaccttgactttggtgctttgaattttggcagAACAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAATCCTATGCTACCCATGTATCTAACCTTAGAAATAAAGGCTTGCCCACG

Basic information

species Glycine max
transcript GLYMA12G05470.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925462|gb|AW831488.1|AW831488
EST:     TGTCTTTGCCAGATGATACAAGTATTTACTGTGGTCATGAATATACCTTG                         AACAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAA
genomic: TGTCTTTGCCAGATGATACAAGTATTTACTGTGGTCATGAATATACCTTGgttagttgtt ... attttggcagAACAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAA
EST: gi|7691890|gb|AW760008.1|AW760008
EST:     TGTCTTTGCCAGATGATACAAGTATTTACTGTGGTCATGAATATACCTTG                         AACAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAA
genomic: TGTCTTTGCCAGATGATACAAGTATTTACTGTGGTCATGAATATACCTTGgttagttgtt ... attttggcagAACAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAA
EST: gi|6071352|gb|AW100739.1|AW100739
EST:     TGTCTTTGCCAGATGATACAAGTATTTACTGTGGTCATGAATATACCTTG                         AACAATTCANAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAA
genomic: TGTCTTTGCCAGATGATACAAGTATTTACTGTGGTCATGAATATACCTTGgttagttgtt ... attttggcagAACAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttataagcctaagtgttgcgaccttgactttggtgctttgaattttggcagAACAATTCAAAGTTTGCCTTGTCTATAGAACCTGAAAACAAGGAACTTCAATCCTATGCTACCCATGTATCTAACCTTAGAAATAAAGGCTTGCCCACG
                         ccttgac  putative branch site (score: 4)
                                        tttgaatttt  TA-rich tract