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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatatttttttaatgctctacttggttatattgctttgtctttttttggtttaaatctagaaaatttgctcttttttttctttctaaatactaattacattaacttctgctttcagGGTCTTGTCAAACTTGCTGATTTTGGTGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAG

Basic information

species Glycine max
transcript GLYMA12G03090.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03090.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0011g02270.t01 (Vitis vinifera), 3'ss of exon 6
gtcatatttttttaatgctctacttggttatattgctttgtctttttttggtttaaatctagaaaatttgctcttttttttctttctaaatactaattacattaacttctgctttcagGGTCTTGTCAAACTTGCTGATTTTGGTGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAG
                  | ||  ||    |   |||     ||| |||||   ||   || |  |  | ||   |   || | |  |   | |  ||  | | | || |  |||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||||| || ||||| |||||||| ||||| || ||||||||||| |
---------------cattttatatgaaacttaagctcacaatttgtttgg---aatggtataggagcttctggatggattttcttaagtaattgcttgaactgatttatattttcagGGTCTTGTGAAACTTGCTGACTTTGGTGTTGCAACAAAATTAACTGAGGCAGATGTTAATACGCATTCCGTTGTTGGGACACCATATTGGATGGCCCCTG

upper sequence: GLYMA12G03090.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S131_142V6.1 (Physcomitrella patens), 3'ss of exon 6
-----------------------------------gtcatatttttttaatgctctacttggttatattgctttgtctttttttggtttaaatctagaaaatttgctcttttttttctttctaaatactaatt--acattaacttctgcttt--cagGGTCTTGTCAAACTTGCTGATTTTGGTGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAG
                                    |    || |||||||  || |  ||  | || |  |   |||   | |   ||| || | ||    ||   | | |       |  | |  ||||||  |   |   |  ||       ||||    || ||||| || |||||||| ||||| || |||||||| ||||||||  | ||||||||||| |||||||| |||||||| |||||||| || |
gtgggttattcacggtctgagctgtgctgtctaagtttccgttcttttaattatccagctgagt-tactagtcc-tctagctcta-cttacatgttgaggggttttccatatgggaaacttcagac-ctaattcaatgctggttattgtccaaatagGGAGAGGTAAAACTCGCAGATTTTGGAGTTGCCACCAAATTAACCGAGGCTGACATCAACACTCATTCTGTTGTTGGTACACCTTATTGGATGGCTCCTG

upper sequence: GLYMA12G03090.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S66_286V6.1 (Physcomitrella patens), 3'ss of exon 6
--------------------gtcatatttttttaatgctcta----cttggttatattgctt-----tgtctttttttggtttaaatctagaaaatttgctcttttttttcttt--ctaaatactaattacattaac-----ttctgctttcagGGTCTTGTCAAACTTGCTGATTTTGGTGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAG
                    |||    |  | | |   |  |     |||  ||  ||||        || |  | | | ||||  | ||||   |||||| || | | |||    ||  ||      | | || |      || |     |||||    || ||||| || |||||||| ||||| || |||||||| ||||||||  | ||||||||||| |||||||| || ||||| |||||||| || |
gtagaatacttaccctttgggtcgagctgctcttaaattgcaatcttttgaataccttgccgagtaacgtgtcctgtagttttatttgtagattttttgcttttgtgtatctggaactgcatgtctgatgccttgatggaaattgtctaaacagGGGGAGGTGAAACTCGCAGATTTTGGAGTTGCCACCAAATTAACCGAGGCTGACATCAACACTCATTCTGTTGTTGGCACTCCTTATTGGATGGCTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttgctcttttttttctttctaaatactaattacattaacttctgctttcagGGTCTTGTCAAACTTGCTGATTTTGGTGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAG
                                          cttctgctttc  CT-rich tract
          ttttttttctttctaa  TA-rich tract