Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaactatcatcttatttcaatcacgagctaccttcatgtttatcatcccattacattataggttttctccgctgcagAGGTATTTTGGCCTTCGGATTTGGCAATGGACGAATTTGTAGAGTGTGTGGCCGGTTCTAAGTTGATGTGATTGATAATCAATTTTTTTGGGTTACATCT

Basic information

species Glycine max
transcript GLYMA12G02110.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31460989|gb|CD403017.1|CD403017
EST:     GCTGGATACTCTTCAATAGGACTAGGCACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCCTTCGGATTTGGCAATGGACGAATTTGTAGAGTGTGTGG
genomic: GCTGGATACTCTTCAATAGGACTAGGCACTTCATCCTTCTAATTTTCAAGgtttgaacta ... tccgctgcagAGGTATTTTGGCCTTCGGATTTGGCAATGGACGAATTTGTAGAGTGTGTGG
EST: gi|192310498|gb|FG999199.1|FG999199
EST:     GCTGGATACTCTTCAATAGGACTAGGCACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCCTTCGGATTTGGCAATGGACGAATTTGTAGAGTGTG
genomic: GCTGGATACTCTTCAATAGGACTAGGCACTTCATCCTTCTAATTTTCAAGgtttgaacta ... tccgctgcagAGGTATTTTGGCCTTCGGATTTGGCAATGGACGAATTTGTAGAGTGTG
EST: gi|58017541|gb|CX704283.1|CX704283
EST:     GCTGGATACTCTTCAATAGGACTAGGCACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCCTTCGGATTTGGCAATGGACGAATTTGTAGAGTGTGTGG
genomic: GCTGGATACTCTTCAATAGGACTAGGCACTTCATCCTTCTAATTTTCAAGgtttgaacta ... tccgctgcagAGGTATTTTGGCCTTCGGATTTGGCAATGGACGAATTTGTAGAGTGTGTGG
EST: gi|58024666|gb|CX711407.1|CX711407
EST:     GCTGGATACTCTTCAATAGGACTAGGCACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCCTTCGGATTTGGCAATGGACGAATTTGTAGAGTGTGTGG
genomic: GCTGGATACTCTTCAATAGGACTAGGCACTTCATCCTTCTAATTTTCAAGgtttgaacta ... tccgctgcagAGGTATTTTGGCCTTCGGATTTGGCAATGGACGAATTTGTAGAGTGTGTGG
EST: gi|58017601|gb|CX704343.1|CX704343
EST:     GCTGGATACTCTTCAATAGGACTAGGCACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCCTTCGGATTTGGCAATGGACGAATTTGTAGAGTGTGTGG
genomic: GCTGGATACTCTTCAATAGGACTAGGCACTTCATCCTTCTAATTTTCAAGgtttgaacta ... tccgctgcagAGGTATTTTGGCCTTCGGATTTGGCAATGGACGAATTTGTAGAGTGTGTGG
EST: gi|192310499|gb|FG999200.1|FG999200
EST:     GCTGGATACTCTTCAATAGGACTAGGCACTTCATCCTTCTAATTTTCAAG                         AGGTATTTTGGCCTTCGGATTTGGCAATGGACGAATTTGTAGAGTGTGTGG
genomic: GCTGGATACTCTTCAATAGGACTAGGCACTTCATCCTTCTAATTTTCAAGgtttgaacta ... tccgctgcagAGGTATTTTGGCCTTCGGATTTGGCAATGGACGAATTTGTAGAGTGTGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgagctaccttcatgtttatcatcccattacattataggttttctccgctgcagAGGTATTTTGGCCTTCGGATTTGGCAATGGACGAATTTGTAGAGTGTGTGGCCGGTTCTAAGTTGATGTGATTGATAATCAATTTTTTTGGGTTACATCT
                                        ttttctccgct  CT-rich tract
 attacattata  TA-rich tract