1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tagattattagaactgggactgcttaggtttttgtaccttttgttgtgagtaaataaatagcaagttatagaactcaaaagaatctcttatttttttcagGCAGCCAATGATCCGATTGCTCCAAATAGGGGAATTCCTCGTGAAGATATCGAG
species | Glycine max |
transcript | GLYMA12G01650.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCAGTTCAGATTCCATAAAACATGTTAGAACCCCTTTGCTTTGCATCCAG GCAGCCAATGATCCGATTGCEST: gi|51341796|gb|CO983113.1|CO983113
genomic: GCAGTTCAGATTCCATAAAACATGTTAGAACCCCTTTGCTTTGCATCCAGgtgaaaaatt ... tttttttcagGCAGCCAATGATCCGATTGC
EST: GCAGTTCAGATTCCATAAAACATGTTAGAACCCCTTTGCTTTGCATCCAG GCAGCCAATGATCCGATTGCTCCAAATAGGGGAATTCCTCGTGAAGATATC
genomic: GCAGTTCAGATTCCATAAAACATGTTAGAACCCCTTTGCTTTGCATCCAGgtgaaaaatt ... tttttttcagGCAGCCAATGATCCGATTGCTCCAAATAGGGGAATTCCTCGTGAAGATATC
gtgagtaaataaatagcaagttatagaactcaaaagaatctcttatttttttcagGCAGCCAATGATCCGATTGCTCCAAATAGGGGAATTCCTCGTGAAGATATCGAG
tctcttatttttttc CT-rich tract
aaaagaatctcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagattattagaactgggactgcttaggtttttgtaccttttgttgtgagtaaataaatagcaagttatagaactcaaaagaatctcttatttttttcagGCAGCCAATGATCCGATTGCTCCAAATAGGGGAATTCCTCGTGAAGATATCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - actgctt
- - - - - - - - - - - - - - - - - - ccttttg
- - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa