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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaaaccttttcttattttgaattgctaaaagggcaccagaatagtaaacacctttttgcaccaaatccctttttcagttcatggcaacaaaaatcgtgcatttattcaggttttccaatttgcctaaatttgattgtcagcattttaagtggtttatgaataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGATGGAGACTTCATGGTTGCCTTCTCCAATGGATCTAATGAGGCCATTGAT

Basic information

species Glycine max
transcript GLYMA12G01350.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393229|gb|EV263104.1|EV263104
EST:     GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATG                         TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATGgtataaaacc ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
EST: gi|208328757|gb|GE130881.1|GE130881
EST:     GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATG                         TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAG
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATGgtataaaacc ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAG
EST: gi|10842950|gb|BF066308.1|BF066308
EST:     GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATG                         TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATGgtataaaacc ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
EST: gi|27445790|gb|CA952913.1|CA952913
EST:     GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATG                         TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATGgtataaaacc ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
EST: gi|193710002|gb|FK643330.1|FK643330
EST:     GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATG                         TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATGgtataaaacc ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
EST: gi|20814980|gb|BQ299458.1|BQ299458
EST:     GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATG                         TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATGgtataaaacc ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
EST: gi|208117910|gb|GD916850.1|GD916850
EST:     AGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATG                         TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
genomic: AGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATGgtataaaacc ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
EST: gi|8282898|gb|BE020459.1|BE020459
EST:     GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATG                         TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATGgtataaaacc ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
EST: gi|27425986|gb|CA937506.1|CA937506
EST:     GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATG                         TTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA
genomic: GGCAATGGCAAGCAGAGCTCTAGTCATGAAGATCGTGATTTGCAAGAATGgtataaaacc ... ataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaatttgcctaaatttgattgtcagcattttaagtggtttatgaataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGATGGAGACTTCATGGTTGCCTTCTCCAATGGATCTAATGAGGCCATTGAT
                                      tttatgaataaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtataaaaccttttcttattttgaattgctaaaagggcaccagaatagtaaacacctttttgcaccaaatccctttttcagttcatggcaacaaaaatcgtgcatttattcaggttttccaatttgcctaaatttgattgtcagcattttaagtggtttatgaataaatgcagTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGATGGAGACTTCATGGTTGCCTTCTCCAATGGATCTAATGAGGCCATTGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA