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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcttatgcattacatggataagactttctttgtatcagtgtgctaaatcagttttgcaagtttcgagagtataatgaattaataaattgtcacttgtttcagATTACATATGGCGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCC

Basic information

species Glycine max
transcript GLYMA12G01270.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01270.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0158g00120.t01 (Vitis vinifera), 3'ss of exon 6
gtaatcttatgcattacatggataagactttctttgtatcagtgtgctaaatcagttttgcaagtttcgagagtataatgaattaataaattgtcacttgtttcagATTACATATGGCGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCC
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gtaaccatatact---caaagctgaagcttgattctggttgttct--ttgtttcattttggaaatttgaaatagataatctgttaccaaattgccatgt---ccagATAACCTATGGTGATCCAACAGTAAGGATGCCTCATTTGGGTCGACCAGTATACAATTGGAAAGTTGTATTATACGTCATTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|41145995|gb|CK606206.1|CK606206
EST:     AACCTGGAGGGACCTATATTTTG                         ATTACATATGGCGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTG
genomic: AACCTGGAGGGACCTATATTTTGgtaatcttat ... cttgtttcagATTACATATGGCGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTG
EST: gi|208313371|gb|GE115633.1|GE115633
EST:     ACTACTAAAACCTGGAGGGACCTATATTTTG                         ATTACATATGGCGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTG
genomic: ACTACTAAAACCTGGAGGGACCTATATTTTGgtaatcttat ... cttgtttcagATTACATATGGCGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTG
EST: gi|298172641|gb|HO019681.1|HO019681
EST:     ACTACTAAAACCTGGAGGGACCTATATTTTG                         ATTACATATGGCGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTG
genomic: ACTACTAAAACCTGGAGGGACCTATATTTTGgtaatcttat ... cttgtttcagATTACATATGGCGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTG
EST: gi|15287181|gb|BI471072.1|BI471072
EST:     ACTACTAAAACCTGGAAGGACCTATATTTTG                         ATTACATATGGCGATCCA
genomic: ACTACTAAAACCTGGAGGGACCTATATTTTGgtaatcttat ... cttgtttcagATTACATATGGCGATCCA
EST: gi|207777459|gb|GD750542.1|GD750542
EST:     ACTACTAAAACCTGGAGGGACCTATATTTTG                         ATTACATATGGCGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTG
genomic: ACTACTAAAACCTGGAGGGACCTATATTTTGgtaatcttat ... cttgtttcagATTACATATGGCGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagttttgcaagtttcgagagtataatgaattaataaattgtcacttgtttcagATTACATATGGCGATCCAACAGTAAGGATGCCTCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCC
                             aattaat  putative branch site (score: 3)
                                             cttgtttc  putative PPT
                  agagtataatgaatta  TA-rich tract