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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtttggacaaagttggtttctcttgatcgctgcttacttttttaattccggatgttggtattatgatagtacaatatactgtttgcatttgcttgacttgtctctatttttttttttgcagAGATGTCATTACCTGCTCTCCCAACTTCTTCTCAGACATTAAAAAATAATG

Basic information

species Glycine max
transcript GLYMA12G01200.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343854|gb|CO984587.1|CO984587
EST:     CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTG                         AGATGTCATTACCTGCTCTCCCAACTTCTTCTCAGACATTAAAAAATAATG
genomic: CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgttt ... ttttttgcagAGATGTCATTACCTGCTCTCCCAACTTCTTCTCAGACATTAAAAAATAATG
EST: gi|208140674|gb|GD938712.1|GD938712
EST:     CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTG                         AGATGTCATTACCTGCTCTCCCAACTTCTTCTCAGACATTAAAAAATAATG
genomic: CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgttt ... ttttttgcagAGATGTCATTACCTGCTCTCCCAACTTCTTCTCAGACATTAAAAAATAATG
EST: gi|19269577|gb|BM885833.1|BM885833
EST:     CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTG                         AGATGTCATTACCTGCTCTCCCAACTTCTTCTCAGACATTAAAAAATAATG
genomic: CTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgttt ... ttttttgcagAGATGTCATTACCTGCTCTCCCAACTTCTTCTCAGACATTAAAAAATAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtacaatatactgtttgcatttgcttgacttgtctctatttttttttttgcagAGATGTCATTACCTGCTCTCCCAACTTCTTCTCAGACATTAAAAAATAATG
                        gcttgac  putative branch site (score: 4)
                              cttgtctctatttttt  CT-rich tract
                                  tctctatttttttttt  TA-rich tract