1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctggctgatattgaaataatcttttccacattatagtacaaccatgaaagtcaagtcattggtgatccacttgtgtttaactttatgatggaacttgcagGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACGGATACTGCCAGGGAAGATTTTCTAA
species | Glycine max |
transcript | GLYMA12G01080.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TACGAAGAAGCCATAGGACAATGCAGCATT GTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGEST: gi|207842517|gb|GD814705.1|GD814705
genomic: TACGAAGAAGCCATAGGACAATGCAGCATTgtgagtatca ... gaacttgcagGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAG
EST: GTTTGATTAAGCTGAACCGCTACGAAGAAGCCATAGGACAATGCAGCATT GTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGEST: gi|209705142|gb|BW653351.1|BW653351
genomic: GTTTGATTAAGCTGAACCGCTACGAAGAAGCCATAGGACAATGCAGCATTgtgagtatca ... gaacttgcagGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAG
EST: GTTTGATTAAGCTGAACCGCTACGAAGAAGCCATAGGACAATGCAGCATT GTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGEST: gi|13790842|gb|BG653433.1|BG653433
genomic: GTTTGATTAAGCTGAACCGCTACGAAGAAGCCATAGGACAATGCAGCATTgtgagtatca ... gaacttgcagGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAG
EST: GTTTGATTAAGCTGAACCGCTACGAAGAAGCCATAGGACAATGCAGCATT GTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGEST: gi|298177353|gb|HO027134.1|HO027134
genomic: GTTTGATTAAGCTGAACCGCTACGAAGAAGCCATAGGACAATGCAGCATTgtgagtatca ... gaacttgcagGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAG
EST: GTTTGATTAAGCTGAACCGCTACGAATAAGCCATAGGACAATGCAGCATT GTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGEST: gi|151410803|gb|EV280618.1|EV280618
genomic: GTTTGATTAAGCTGAACCGCTACGAAGAAGCCATAGGACAATGCAGCATTgtgagtatca ... gaacttgcagGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAG
EST: GTTTGATTAAGCTGAACCGCTACGAAGAAGCCATAGGACAATCCAGCATT GTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAG
genomic: GTTTGATTAAGCTGAACCGCTACGAAGAAGCCATAGGACAATGCAGCATTgtgagtatca ... gaacttgcagGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAG
gaaagtcaagtcattggtgatccacttgtgtttaactttatgatggaacttgcagGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACGGATACTGCCAGGGAAGATTTTCTAA
gtttaac putative branch site (score: 3)
tttaactttatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggctgatattgaaataatcttttccacattatagtacaaccatgaaagtcaagtcattggtgatccacttgtgtttaactttatgatggaacttgcagGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACGGATACTGCCAGGGAAGATTTTCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA