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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatttgaaaaatactaacatgagccacctttcaatatttttttttcatcagaacatgttatcctgattggcttatgcttgagcagGTACTTAATTCTCTTGAAGAGTGTACGAAAGACATTAAAGGAGCTAAAGTTGAGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAA

Basic information

species Glycine max
transcript GLYMA12G00790.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13125626|gb|BG316196.1|BG316196
EST:     AAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATTAATGAG                         GTACTTAATTCTCTTGAAGAGTGTACGAAAGACATTAAAGGAGCTAAAGTT
genomic: AAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATTAATGAGgtatgcattt ... gcttgagcagGTACTTAATTCTCTTGAAGAGTGTACGAAAGACATTAAAGGAGCTAAAGTT
EST: gi|12774838|gb|BG239704.1|BG239704
EST:     AAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATTAATGAG                         GTACTTAATTCTCTTGAAGAGTGTACGAAAGACATTAAAGGAGCTAAAGTT
genomic: AAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATTAATGAGgtatgcattt ... gcttgagcagGTACTTAATTCTCTTGAAGAGTGTACGAAAGACATTAAAGGAGCTAAAGTT
EST: gi|10234926|gb|BE803814.1|BE803814
EST:     AATTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATTAATGAG                         GTACTTAATTCTCTTGAAGAGTGTACGAAAGACATTAAAGGAGCTAAAGTT
genomic: AAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATTAATGAGgtatgcattt ... gcttgagcagGTACTTAATTCTCTTGAAGAGTGTACGAAAGACATTAAAGGAGCTAAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatatttttttttcatcagaacatgttatcctgattggcttatgcttgagcagGTACTTAATTCTCTTGAAGAGTGTACGAAAGACATTAAAGGAGCTAAAGTTGAGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAA
                              tcctgat  putative branch site (score: 3)
     atttttttttcatca  TA-rich tract