Sequence
atgc intronic sequence ATGC exonic sequencegtcttaatcagttcattcctctctctgtttgcatatgcttgtttatgtgtcttttaactgagaatttgctttaacagTTTTCAGGGAACTTCACTATTCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTGAGTGTTC
Basic information
| species | Glycine max |
| transcript | GLYMA11G37770.1 |
| intron # | 6 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 6
gtcttaatcagttcattcctctctctgtttgcatatgcttgtttatgtgtcttttaactgagaatttgcttt--aacagTTTTCAGGGAACTTCACTATTCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTGAGTGTTC
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------gttggttcattcc---ctttgtttg-atgt-tttgacttcacgtcata-aattgtttatcatcttctcaacagTTTTCAGAAAACTTCACTATTGTCCTGTTTCACTATGACGGCCGGGTAACTGAGTGGGATGAGTTTGAATGGTCAAAGACTGCTATACACATTAGCGTAC
upper sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G24570.1 (Arabidopsis thaliana), 3'ss of exon 5
gtcttaatcagttcattcctctctctgtt-tgcatatgcttgtttatgtgtcttttaactgagaatttgctttaa--cagTTTTCAGGGAACTTCACTATTCTGCTATTTCATTATGATGGCCGAACTACTGAATGG---GATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTGAGTGTTC
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--gttgattgatataacactttttgttttctgtttttgcttaatagtaaactcattatgttttg-tctactcaaatacagTTTTCAGAGAACTTTACTATTGTTCTGTTTCATTATGATGGCGTAACAAGTGCATGGAATGATGAGTTTGAGTGGTCGAGGAATGCAATACACATAAGTG---
upper sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 6
gtcttaatcagttcattcctctctc-tgtttgcatatgcttgtttatgtgtcttttaactgagaatttgctttaacagTTTTCAGGGAACTTCACTATTCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTGAGTGTTC
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------gttgatttctccccctctcctctctgctactaaatttgtctctcttctgctactaaatgtctgttgtg-cagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC
upper sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 2
gtcttaatcagttcattcctctctc-tgtttgcatatgcttgtttatgtgtcttttaactgagaatttgctttaacagTTTTCAGGGAACTTCACTATTCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTGAGTGTTC
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------gttgatttctccccctctcctctctgctactaaatttgtctctcttttgctactaaatatctattgtg-cagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCAAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193653823|gb|FK598295.1|FK598295EST: TCACTGTTGGCTATGATCAGAAAAATAATATTGATGCAGCTGTGAAAAAG TTTTCAGGGAACTTCACTATTCTGCTATTT
genomic: TCACTGTTGGCTATGATCAGAAAAATAATATTGATGCAGCTGTGAAAAAGgtcttaatca ... gctttaacagTTTTCAGGGAACTTCACTATTCTGCTATTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctgtttgcatatgcttgtttatgtgtcttttaactgagaatttgctttaacagTTTTCAGGGAACTTCACTATTCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTGAGTGTTC
ttttaac putative branch site (score: 2)
tttgcttt putative PPT
ttgtttat TA-rich tract
