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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgattgaccatctctctgttaacagtatatatacttcctcttttcttttgcatcaaattcttatctattattgttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGTGCTTCATCTTAAATTGCCCTTGAAGCTAGTTATCTGATGACCTACATTC

Basic information

species Glycine max
transcript GLYMA11G37160.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723027|gb|BW668873.1|BW668873
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAG
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAG
EST: gi|192334008|gb|FK024821.1|FK024821
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|209723028|gb|BW668874.1|BW668874
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|214009864|gb|DB990363.1|DB990363
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|214004051|gb|DB984957.1|DB984957
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|58018377|gb|CX705119.1|CX705119
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|209707521|gb|BW664980.1|BW664980
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|192299836|gb|FG990073.1|FG990073
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|31463467|gb|CD405495.1|CD405495
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|9564167|gb|BE473676.1|BE473676
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|57575590|gb|CX548565.1|CX548565
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|214007657|gb|DB987416.1|DB987416
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|209709086|gb|BW658802.1|BW658802
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|193361487|gb|FK327349.1|FK327349
EST:     AGGAAGAGCCTGTTGTAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGG
genomic: AGGAAGAGCCTG-TG-AAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGG
EST: gi|213620278|gb|DB961423.1|DB961423
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGC
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGC
EST: gi|214007728|gb|DB986094.1|DB986094
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|192334007|gb|FK024820.1|FK024820
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|58021552|gb|CX708293.1|CX708293
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTGGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|213593183|gb|DB983415.1|DB983415
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|213602730|gb|DB968928.1|DB968928
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|192294589|gb|FG986438.1|FG986438
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|192315909|gb|FK007070.1|FK007070
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|10843191|gb|BF066504.1|BF066504
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGATAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCT
EST: gi|192330296|gb|FK019861.1|FK019861
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|209709087|gb|BW658803.1|BW658803
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|18718319|gb|BM523049.1|BM523049
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|213605006|gb|DB982312.1|DB982312
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|209696456|gb|BW655663.1|BW655663
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|192300828|gb|FG989725.1|FG989725
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|192304747|gb|FG998777.1|FG998777
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|209697266|gb|BW675477.1|BW675477
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|26059831|gb|CA802745.1|CA802745
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|213592920|gb|DB966025.1|DB966025
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|213613516|gb|DB978621.1|DB978621
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|58016113|gb|CX702855.1|CX702855
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|192304746|gb|FG998776.1|FG998776
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAA
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAA
EST: gi|24205425|gb|BU964678.1|BU964678
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|209701081|gb|BW652167.1|BW652167
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|209697265|gb|BW675476.1|BW675476
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|192315910|gb|FK007071.1|FK007071
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAA
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAA
EST: gi|213593378|gb|DB973571.1|DB973571
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|213591076|gb|DB979323.1|DB979323
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|151403328|gb|EV273138.1|EV273138
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|151407792|gb|EV277607.1|EV277607
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|151400371|gb|EV270185.1|EV270185
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|214007626|gb|DB987399.1|DB987399
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
EST: gi|7685510|gb|AW756158.1|AW756158
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGCGAAGAAAGAT                         GCTGAGACCCAACTGGCGACAAGCAACAGGAAGGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGT
EST: gi|58014186|gb|CX700928.1|CX700928
EST:     GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAG                         GCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT
genomic: GCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatgattg ... gttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatacttcctcttttcttttgcatcaaattcttatctattattgttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGTGCTTCATCTTAAATTGCCCTTGAAGCTAGTTATCTGATGACCTACATTC
                                           ttgttctt  CT-rich tract
                        atcaaattcttatcta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatgattgaccatctctctgttaacagtatatatacttcctcttttcttttgcatcaaattcttatctattattgttcttgtagGCTGAGACCCAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGTGCTTCATCTTAAATTGCCCTTGAAGCTAGTTATCTGATGACCTACATTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC