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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttatttctagcttatgtctatttttgttcaaatggaagttgatgtagatttatttttgtcatcccctattcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACC

Basic information

species Glycine max
transcript GLYMA11G36990.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G36990.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G67325.2 (Arabidopsis thaliana), 3'ss of exon 7
--------------------------------------gtgtgttatttctagcttatgtctatttttgttcaaatggaagttgatgtagatttatttttgtcatcccctattcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACC
                                         ||| |  | ||      | || | |||  |  | ||  |||  |  | ||| |||| | ||  |   || ||     ||||| ||||||| || ||||| ||||||||||| || ||||| ||||| || || |||||||||||||| || |||||||| ||||||||||| || || ||
gtatgtgctagaagagttaggccttttcccattctagaacatgtcagctgtaaagctggcctttattttat--agtgatagtcaactt-gatatattct-gttgtgttctttt----acagATTCAACTCGCGATAATGATTGGACATGTCCGAATTGTGGTAATGTAAACTTCTCATTCAGAACTGTATGTAACATGAGGAAGTGCAACACTCCAAAGCC

upper sequence: GLYMA11G36990.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv01s0010g03700.t01 (Vitis vinifera), 3'ss of exon 6
-----------------gtgtgttatttc-tagcttatg--tctatt-tttgttcaaatggaagttgatgtagatttatttttgtcatcccctattcctagc---agATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACC
                  | || |||||  ||  || ||   | ||| ||||     |||| |  |  | ||   | | | || ||||||  |      | |   ||||||||| ||||| ||||||||||| ||||| |||||||| |||||||| || || || |||||||| || |||||||| |||||||| ||||| |||||
gtgcaggcttgtcacacctttgctattttataaattgtgagccaattatttggcatcatggcaaattctttatcctgactgtt-tcatccttttaatgaatctctagATGCAACCCGTGATAATGACTGGACCTGTCCTAAATGTGGAAATGTCAACTTCTCTTTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCAAAACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316562|gb|GR828099.1|GR828099
EST:     TGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAG--AAAA---A-AG                         ATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
genomic: TGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGGTACAGgtgtgttatt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
EST: gi|5058405|gb|AI736937.1|AI736937
EST:     TGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAG--AAAA---A-AG                         ATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
genomic: TGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGGTACAGgtgtgttatt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
EST: gi|254316561|gb|GR828098.1|GR828098
EST:     TGCTAGGCCTGGATTTTTTCACGATGACA-GTCACAGAAAAAAG--A---                         -TGCAACTCGTGACA-TGACTGGACATGTCCAAA-TGTGGCA
genomic: TGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGGTACAGgtgtgttatt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCA
EST: gi|23729396|gb|BU762782.1|BU762782
EST:     TGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAG--AAAA---A-AG                         ATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
genomic: TGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGGTACAGgtgtgttatt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
EST: gi|13563438|gb|BG551584.1|BG551584
EST:     TGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAG--AAAA---A-AG                         ATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
genomic: TGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGGTACAGgtgtgttatt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
EST: gi|254331208|gb|GR845787.1|GR845787
EST:     TGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG--A---                         -TGCAACTCGTGACAATGACTGGACATGTCCCAAATGTGGCAATGTCAATT
genomic: TGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGGTACAGgtgtgttatt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
EST: gi|192328140|gb|FK022849.1|FK022849
EST:     TTTTTTCACGATGACAAGTCACAG--AAAA---A-AG                         ATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
genomic: TTTTTTCACGATGACAAGTCACAGAAAAAAGGTACAGgtgtgttatt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
EST: gi|192328242|gb|FK020461.1|FK020461
EST:     TGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAG--A---                         -TGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT
genomic: TGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGGTACAGgtgtgttatt ... ttcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttcaaatggaagttgatgtagatttatttttgtcatcccctattcctagcagATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACC
             agttgat  putative branch site (score: 5)
                             tttttgtcatccccta  putative PPT
                  atgtagatttattttt  TA-rich tract