Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggaatttagtccttcatctggaaattttatggagtctatatatgcactctaaataaattatagtactgattgtttgacaaaaagctgcttttgcttacagTGGTAGTTCCTCAATGCAACAAACATCATCTTCCACTCCTGCTGAG

Basic information

species Glycine max
transcript GLYMA11G34130.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299785|gb|FG987801.1|FG987801
EST:     GAGATAAATGCTCTTCCTGTCCACAAATACAAAGTTTCTGGTCCTCAAAG                         TGGTAGTTCCTCAATGCAACAAACATCATCTTCCACTCCTGCTGTGAAG
genomic: GAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTCCTCAAAGgtaagtaatc ... ttgcttacagTGGTAGTTCCTCAATGCAACAAACATCATCTTCCACTCCTGCTG--A-G
EST: gi|151409236|gb|EV279044.1|EV279044
EST:     GAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTCCTCAAAG                         TGGTAGTTCCTCAATGCAACAAACATCATCTTCCACTCCTGCTGAG
genomic: GAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTCCTCAAAGgtaagtaatc ... ttgcttacagTGGTAGTTCCTCAATGCAACAAACATCATCTTCCACTCCTGCTGAG
EST: gi|298179910|gb|HO025125.1|HO025125
EST:     GAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTCCTCAAAG                         TGGTAGTTCCTCAATGCAACAAACATCATCTTCCACTCCTGCTGAGAAG
genomic: GAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTCCTCAAAGgtaagtaatc ... ttgcttacagTGGTAGTTCCTCAATGCAACAAACATCATCTTCCACTCCTGCT--G-AG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actctaaataaattatagtactgattgtttgacaaaaagctgcttttgcttacagTGGTAGTTCCTCAATGCAACAAACATCATCTTCCACTCCTGCTGAG
                                          cttttgctt  CT-rich tract
     aaataaattatagtac  TA-rich tract