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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccaaattttacgacgatttctttttatcaccacagctgatttatgaagggaaatggccaaggttaatttatggggtagaaataatgattcagttctattcagccgaatttttattttgatactattgctaatgtcattatttgatttttctagGTCCACAGAAATTCCTGTCTTAGATTCAGGAATTACTGATACCTTGCACGACTCACCCTTGCTGACATATCCGGGCAACCTAATTGAAAGTAACCATGAG

Basic information

species Glycine max
transcript GLYMA11G34050.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847641|gb|BF070288.1|BF070288
EST:     GTTTGTGTTGGTGATCCTTCTTCTCAATGTGAAACATCCCAGCCTACCAG                         GTCCACAGAAATTCCTGTCTTAGATTCAAGGATTTACTGATACCTTGCACG
genomic: GTTTGTGTTGGTGATCCTTCTTCTCAATGTGAAACATCCCAGCCTACCAGgtgagccaaa ... atttttctagGTCCACAGAAATTCCTGTCTTAGATTC-AGGAATTACTGATACCTTGCACG
EST: gi|6455221|gb|AW185904.1|AW185904
EST:     GTTTGTGTTGGTGATCCTTCTTCTCAATGTGAAACATCCCAGCCTACCAG                         GTCCACAGAAATTCCTGTCTTAGATTCAGGAATTACTGATACCTTGCACGA
genomic: GTTTGTGTTGGTGATCCTTCTTCTCAATGTGAAACATCCCAGCCTACCAGgtgagccaaa ... atttttctagGTCCACAGAAATTCCTGTCTTAGATTCAGGAATTACTGATACCTTGCACGA
EST: gi|9258784|gb|BE346931.1|BE346931
EST:     TTTGTGTTGGTGATCCTTCTTCTCAATGTGAAACATCCCAGCCTACGCAG                         GTCCACAGAAATTCCTGTGTTAGATTCAGGAATTACTGATACCTTGCACG
genomic: TTTGTGTTGGTGATCCTTCTTCTCAATGTGAAACATCCCAGCCTAC-CAGgtgagccaaa ... atttttctagGTCCACAGAAATTCCTGTCTTAGATTCAGGAATTACTGATACCTTGCACG
EST: gi|192323863|gb|FK018614.1|FK018614
EST:     GTTTGTGTTGGTGATCCTTCTTCTCAATGTGAAACATCCCAGCCTACCAG                         GTCCACAGAAATTCCTGTCTTAGATTCAGGAATTACTGATACCCTGCACGA
genomic: GTTTGTGTTGGTGATCCTTCTTCTCAATGTGAAACATCCCAGCCTACCAGgtgagccaaa ... atttttctagGTCCACAGAAATTCCTGTCTTAGATTCAGGAATTACTGATACCTTGCACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagccgaatttttattttgatactattgctaatgtcattatttgatttttctagGTCCACAGAAATTCCTGTCTTAGATTCAGGAATTACTGATACCTTGCACGACTCACCCTTGCTGACATATCCGGGCAACCTAATTGAAAGTAACCATGAG
                                              tttttct  CT-rich tract
       aatttttattttgata  TA-rich tract