Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttataggatgatacaggcatagttccctttcgtgtatcctatttttaatttgagaagtatattccttgtggcatctgagtaacacagattttggcagGTTGTCCCAGTAGCTTCAGTGTTGACTCCCAACCAGTTTGAGGCAGAACTACTGACAGGCTTCAG

Basic information

species Glycine max
transcript GLYMA11G33970.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G33970.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0006g01660.t01 (Vitis vinifera), 3'ss of exon 6
tttttataggatgatacaggcatagttccctttcgtgtatcctatttttaatttgagaagtatattccttgtg-gcatctgagtaacacagatttt----ggcagGTTGTCCCAGTAGCTTCAGTGTTGACTCCCAACCAGTTTGAGGCAGAACTACTGACAGGCTTCAG
  || |    || ||   | ||| |       || || ||  | | |   || ||     |   |||||  ||   |  | | || |     ||||    |  ||||||| ||||| |||||| |||||||||| || |||||||| ||||||||||| || || |||||
acttgaataaataat--tgccattgagtttgatcatgaattttgtct---atctgtattattatttcctgatgcaaagatcactagctagactttttatggttagGTTGTTCCAGTTGCTTCAATGTTGACTCCTAATCAGTTTGAAGCAGAACTACTAACTGGGTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016835|gb|CX703577.1|CX703577
EST:     AAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAG                         GTTGTCCCAGTAGCTTCAGTGTTGACTCCCAACCAGTTTGAGGCAGAACTA
genomic: AAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGgtatgactgt ... attttggcagGTTGTCCCAGTAGCTTCAGTGTTGACTCCCAACCAGTTTGAGGCAGAACTA
EST: gi|58023232|gb|CX709973.1|CX709973
EST:     AAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAG                         GTTGTCCCAGTAGCTTCAGTGTTGACTCCCAACCAGTTTGAGGCAGAACTA
genomic: AAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGgtatgactgt ... attttggcagGTTGTCCCAGTAGCTTCAGTGTTGACTCCCAACCAGTTTGAGGCAGAACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaatttgagaagtatattccttgtggcatctgagtaacacagattttggcagGTTGTCCCAGTAGCTTCAGTGTTGACTCCCAACCAGTTTGAGGCAGAACTACTGACAGGCTTCAG
                                  gagtaac  putative branch site (score: 2)
            aagtatatt  TA-rich tract