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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctgttgttcagagtttgatttcatcatctcatgtactttagccaacattgacttgttactttaattacatatacagGCACTTGGATATTGCTGGTCTTAAGAGCTCCAAACTTTACGTCTGGAATGGCATTGCTTTGTTCTTCGGGTGGTTG

Basic information

species Glycine max
transcript GLYMA11G31750.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G31750.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g08450.t01 (Vitis vinifera), 3'ss of exon 6
gtaaatctgttgttcagagtttgatttcatcatctcatgtactttagccaacattgacttgttactttaattacatatacagGCACTTGGATATTGCTGGTCTTAAGAGCTCCAAACTTTACGTCTGGAATGGCATTGCTTTGTTCTTCGGGTGGTTG
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gtaaagtcagcaccacaagttc--tttca--atgtaattggtt---gtcaacagtgagtgatt-ttgtaaatacttctgcagGCACTTGGATGTTGCTGGTCTGAAGAGTTCAAACCTATACATCTGCAATGGCATCGCACTGTTCTTTGGGTGGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294239|gb|FG986328.1|FG986328
EST:     CTAATGGTTCTTTTCTCTGAGAGCACAACTCCTTTTGTAAATCTAAGATG                         GCACTTGGATATTGCTGGTCTTAAGAGCTCCAAACTTTACGTCTGGAATGG
genomic: CTAATGGTTCTTTTCTCTGAGAGCACAACTCCTTTTGTAAATCTAAGATGgtaaatctgt ... acatatacagGCACTTGGATATTGCTGGTCTTAAGAGCTCCAAACTTTACGTCTGGAATGG
EST: gi|192314282|gb|FK007020.1|FK007020
EST:     CTAATGGTTCTTTTCTCTGAGAGCACAACTCCTTTTGTAAATCTAAGATG                         GCACTTGGATATTGCTGGTCTTAAGAGCTCCAAACTTTACGTCTGGAATGG
genomic: CTAATGGTTCTTTTCTCTGAGAGCACAACTCCTTTTGTAAATCTAAGATGgtaaatctgt ... acatatacagGCACTTGGATATTGCTGGTCTTAAGAGCTCCAAACTTTACGTCTGGAATGG
EST: gi|192314283|gb|FK007021.1|FK007021
EST:     CTAATGGTTCTTTTCTCTGAGAGCACAACTCCTTTTGTAAATCTAAGATG                         GCACTTGGATATTGCTGGTCTTAAGAGCTCCAAACTTTACGTCTGGAATGG
genomic: CTAATGGTTCTTTTCTCTGAGAGCACAACTCCTTTTGTAAATCTAAGATGgtaaatctgt ... acatatacagGCACTTGGATATTGCTGGTCTTAAGAGCTCCAAACTTTACGTCTGGAATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcatctcatgtactttagccaacattgacttgttactttaattacatatacagGCACTTGGATATTGCTGGTCTTAAGAGCTCCAAACTTTACGTCTGGAATGGCATTGCTTTGTTCTTCGGGTGGTTG
                               ttgttactttaattac  TA-rich tract