1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttttccatgatggtgagttatcacttggaaatgaattgttagtggtatgtagtaaacaagagtcctgggtcatttctaatgttttcaattgctttgcagGTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGATCTTGCGATGCAAGACGTGCTGGAAACTGGATATTGGTCAGATGATGAAG
species | Glycine max |
transcript | GLYMA11G20130.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCAGTGATGAGGATTTTAGTGATGATGNNGGCAAACATGCCCTTGAAGAG GTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGATEST: gi|51342988|gb|CO983721.1|CO983721
genomic: GCAGTGATGAGGATTTTAGTGATGATGGCGGCAAACATGCCCTTGAAGAGgtagacttct ... tgctttgcagGTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGAT
EST: GCAGTGATGAGGATTTTAGTGATGATGGCGGCAAACATGCCCTTGAAGAG GTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGATEST: gi|10846412|gb|BF069315.1|BF069315
genomic: GCAGTGATGAGGATTTTAGTGATGATGGCGGCAAACATGCCCTTGAAGAGgtagacttct ... tgctttgcagGTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGAT
EST: GCAGTGATGAGGATTTTAGTGATGATGGCGGCAAACATGCCCTTGAAGAG GTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGATEST: gi|6916259|gb|AW397789.1|AW397789
genomic: GCAGTGATGAGGATTTTAGTGATGATGGCGGCAAACATGCCCTTGAAGAGgtagacttct ... tgctttgcagGTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGAT
EST: GCAGTGATGAGGATTTTAGTGATGATGGCGGCAAACATGCCCTTGAAGAG GTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGATEST: gi|151398828|gb|EV268699.1|EV268699
genomic: GCAGTGATGAGGATTTTAGTGATGATGGCGGCAAACATGCCCTTGAAGAGgtagacttct ... tgctttgcagGTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGAT
EST: GCAGTGATGAGGATTTTAGTGATGATGGCGGCAAACATGCCCTTGAAGAG GTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGATEST: gi|151401672|gb|EV271485.1|EV271485
genomic: GCAGTGATGAGGATTTTAGTGATGATGGCGGCAAACATGCCCTTGAAGAGgtagacttct ... tgctttgcagGTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGAT
EST: GCAGTGATGAGGATTTTAGTGATGATGGCGGCAAACATGCCCTTGAAGAG GTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGATEST: gi|209724198|gb|BW658104.1|BW658104
genomic: GCAGTGATGAGGATTTTAGTGATGATGGCGGCAAACATGCCCTTGAAGAGgtagacttct ... tgctttgcagGTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGAT
EST: GCAGTGATGAGGATTTTAGTGATGATGGCGGCAAACATGCCCTTGAAGAG GTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGAT
genomic: GCAGTGATGAGGATTTTAGTGATGATGGCGGCAAACATGCCCTTGAAGAGgtagacttct ... tgctttgcagGTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGAT
gtatgtagtaaacaagagtcctgggtcatttctaatgttttcaattgctttgcagGTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGATCTTGCGATGCAAGACGTGCTGGAAACTGGATATTGGTCAGATGATGAAG
ttctaat putative branch site (score: 2)
ttgcttt putative PPT
atttctaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttccatgatggtgagttatcacttggaaatgaattgttagtggtatgtagtaaacaagagtcctgggtcatttctaatgttttcaattgctttgcagGTAGGATCAGTTGATGAGGAATCAACAAAATCCGACGAAGAGTATGATGATCTTGCGATGCAAGACGTGCTGGAAACTGGATATTGGTCAGATGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - -gatggtg
- - - - - - - - - - - cacttgg
- - - - - - - - - - - - - - - - - - - - - - ggtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - -taaacaag