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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgatttgaaacttttgagccatcctcaattcctcattgacatttgttatatatattttatttatttatttattttaaattctttctatattttttaattgtcattgtacttatatttggtgattctgtctggatttgaatgatagtaaatggtatcttacttggaaatcaattgtttttagATTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTCATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGT

Basic information

species Glycine max
transcript GLYMA11G19970.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19970.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv03s0017g01120.t01 (Vitis vinifera), 3'ss of exon 7
gtttgatttgaaacttttgagccatcctcaattcctcattgacatttgttatatatattttatttatttatttattttaaattctttctatattttttaattgtcattgtacttatatttggtgattctgtctggatttgaatgatagtaaatggtatcttacttggaaat--caattgtttttagATTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTCATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGT
                                                                                           |  ||||| |||   ||| | ||| || |  |   |   | ||| ||   ||| |||| | || | |||||| ||| | |  | |||  || ||||||||||||||||  || |||| || |||||  | |||||| ||||   |||||| |||||||||  ||| |||||||| | ||| ||||||||||||||
------------------------------------------------------------------------------------agatagaaggttttacttggagttgcaatta-atgtcatctgtgaatttgg-ttcttatggtagttactgctctcttacatggtactttccattccttgtagATTCATTTGGTTCTGTCCAGGTAGCAGAGCTGGACTGGGGAAATGAAGATCATATAAAGGCAGTTAATCCACCATTTGATTTCATTATTGGCACTGATGT

upper sequence: GLYMA11G19970.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0061g00490.t01 (Vitis vinifera), 3'ss of exon 7
gtttgatttgaaacttttgagccatcctcaattcctcattgacatttgttatatatattttatttatttatttattttaaattctttctatattttttaattgtcattgtacttatatttggtgattctgtctggatttgaatgatagtaaatggtatcttacttggaaat--caattgtttttagATTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTCATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGT
                                                                                           |  ||||| |||   ||| | ||| || |  | | |   | ||| ||   ||| |||| | || | |||||| ||| | |  | |||  || ||||||||||||||||  || |||| || |||||  | |||||| ||||   |||||| |||||||||  ||| |||||||| | ||| ||||||||||||||
------------------------------------------------------------------------------------acatagaaggttttacttggagttgcaatta-atgtcatcagtgaatttgg-ttcttatggtagttactgctctcttacatggtactttccattccttgtagATTCATTTGGTTCTGTCGAGGTAGCAGAGCTGGACTGGGGAAATGAAGATCATATAAAGGCAGTTAATCCACCATTTGATTTCATTATTGGCACTGATGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337678|gb|BI498334.1|BI498334
EST:     ACAGAGAAATGTTGAGCGTAATATTTCACGGATCATGCAAAAGAATCCTG                         ATTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTC
genomic: ACAGAGAAATGTTGAGCGTAATATTTCACGGATCATGCAAAAGAATCCTGgtttgatttg ... ttgtttttagATTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTC
EST: gi|192295995|gb|FG989403.1|FG989403
EST:     ACGGATCATGCAAAAGAATCCTG                         ATTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGCTGAGAGTC
genomic: ACGGATCATGCAAAAGAATCCTGgtttgatttg ... ttgtttttagATTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctggatttgaatgatagtaaatggtatcttacttggaaatcaattgtttttagATTCATTTGGTTCGATCAAGGTGGCTGAGCTTCAGTGGGGAGATGAGAGTCATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGT
                           atcttac  putative branch site (score: 3)
                                             ttgttttt  putative PPT
                                      aaatcaattgttttta  TA-rich tract