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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgaacattccactatcttacgttactcttcagtagttgaaataaaattttgtggtgtagcaatgatttctgttttcttcacctaactgctagGTTCCTCTGGGTCTGGCAATTACATGGGCATTTGCTTTCTTGCTGACTGAAGCAGGAGTTTACAGCTACAAAGGGTGTGATGTAAATATACCTGCCTCAA

Basic information

species Glycine max
transcript GLYMA11G19420.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19420.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G095611_T01 (Zea mays), 3'ss of exon 6
gtaagttgaacattccactatcttacgttactc-ttcagtagttgaa-----ataaaattttg--tggtgtagcaa--tgatttctgttttcttcacctaactgct--agGTTCCTCTGGGTCTGGCAATTACATGGGCATTTGCTTTCTTGCTGACTGAAGCAGGAGTTTACAGCTACAAAGGGTGTGATGTAAATATACCTGCCTCAA
||||| |   | |   |  |  ||| | |  |  || | |   || |          ||  ||  || | |   |   | |||||||   |  | |     |  ||  |||||||||| ||  | | ||| ||||||||  |||||||| | || || | | | |||||||| ||||||||||| ||||||| |||||| ||||||||||
gtaagattttc-tcttatgaagttatgatgttgattgaatgtgtggatctgtgctgcatgctggttgatatgagaggctaatttctgaactactgatgctgcctctttagGTTCCTCTTGGATTAGGAATCACATGGGCTGTTGCTTTCGTTCTCACAGCAACTGGAGTTTATAGCTACAAAGGTTGTGATGCAAATATTCCTGCCTCAA

upper sequence: GLYMA11G19420.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 6
---------------gtaagttgaacattccactatcttacgttactcttcagtagttgaaataaaattttgtggtgt-agcaatgatttct----gttttcttcaccta------actgctagGTTCCTCTGGGTCTGGCAATTACATGGGCATTTGCTTTCTTGCTGACTGAAGCAGGAGTTTACAGCTACAAAGGGTGTGATGTAAATATACCTGCCTCAA
                 || |  | ||||  |  ||  |    |  |  |   |  ||||    | || ||||  ||  | |  |   ||||    || |  ||  ||||        ||  |||||||| ||||||||||||| || |||||   ||||||| | |||||||| ||||||||||| | ||||||||| |||||||||||| |||| ||||| |
gtatgtttattgtttacaaatcca-cattttatcattgtgtcattgttgttgatttttgagcatatatcttgttatgccaactgtaccttctttgagtataatttgcctatattttggtgtcagGTTCCTTTGGGTCTGGCAATCACGTGGGCCACTGCTTTCCTTCTGACTGAGGCAGGAGTTTATAACTACAAAGGTTGTGATGTAAATGTACCAGCCTCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaataaaattttgtggtgtagcaatgatttctgttttcttcacctaactgctagGTTCCTCTGGGTCTGGCAATTACATGGGCATTTGCTTTCTTGCTGACTGAAGCAGGAGTTTACAGCTACAAAGGGTGTGATGTAAATATACCTGCCTCAA
                                          acctaac  putative branch site (score: 2)
                            tttctgttttcttcac  CT-rich tract
     aaaattttgt  TA-rich tract