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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaacttatgttattgttactcccgtgtcccatttcctaaaagtggaagaattgacatttgtattacagGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTG

Basic information

species Glycine max
transcript GLYMA11G18930.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G18930.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os05g37120.2 (Oryza sativa), 3'ss of exon 6
-----------------------gtatttaacttatgttattg-ttactcccgtgtcccatttcctaaaagtggaagaattgacatttgtattacagGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTG
                       | |   || |||  || |||  |   |  || |  ||| |   ||   |     ||     ||||| |  |||||| ||||| |||||||||||||| |||||||| |||||||||||  ||||  | || ||||| |||||||| ||  | || ||| | |||||||||||||
gtaagctccgaatgattctggagggaaagaaattacatttttggctgaacatgtttggcatatgtcaaccttattgaaa-----atttgaa--acagGCAGCTGTCGCTGTTCAAGCAGGAGTATGTGTAGACATATTTGCTATAACCGACGAATACACCGATTTGGCTTCGTTGAAGTTTTTAAGTATTGAAAGTG

upper sequence: GLYMA11G18930.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os04g33690.1 (Oryza sativa), 3'ss of exon 6
gtatttaacttatgttattgttactcc-cgtgtccc----atttcctaaaa-gtggaagaattgacatttgtattacagGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTG
    | |   | ||| ||| || |||      |  |    || | ||| ||  |     ||||| |||    || ||||||||||  |||||||||||||||||||||||| ||| | |||||  | |||||||| ||||| ||| |  | ||| | ||| |||| ||| |||| || |
---gtaagtctctgtaatttttgctcaataaattacaagaatattctagaatatatcctaattggcat----atcacagGCTGCTAGTGCTGTTCAAGCAGGTGTATGTGTGGACCTTTTTGCAATTACAAATGAATACACAGATCTTTCTTCCTTGAAAGTTCTTAGTGTTGAGAGCG

upper sequence: GLYMA11G18930.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G141735_T01 (Zea mays), 3'ss of exon 6
----gtatttaacttatgttattgttactcccgtgtcccatttcctaaaagtggaagaattgacatttgtattacagGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTG
    | ||    || |  ||    ||      |  | |  | |  |  |  ||     ||||| | ||| |  |||||| ||||||||||||||  |||| |||||  | ||||||||||| |||||  |||| |||||||||||||| || || || ||| | ||||| |||||||
gtaagcatgagtctaaaatttaaattcgatttgatttctctgttatgtac-tgatcttattgaaaattgaa--acagGCAGCTGTTGCTGTTCAGTCAGGAGTATGCATAGACATATTTGCTGTAACTGATGAATACACTGATTTGGCTTCACTGAAGTTTTTAAGTATCGAAAGTG

upper sequence: GLYMA11G18930.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G106140_T01 (Zea mays), 3'ss of exon 6
----gtatttaacttatgttattgttactcccgtgtcccatttcctaaaagtggaagaattgacatttgtattacagGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTG
    | ||    || |  ||     |      |  |  |  | ||    | ||     ||||||| ||| |  |||||| ||||||||||||||  |||| || ||  | ||||||||||| |||||  |||| ||||| |||||||| || || || ||| | |||||||||||||
gtaagcatgagtctgaaattcaaaattggtttgactttctctgccatgtactgatcttattgacaattgaa--acagGCAGCTGTTGCTGTTCAGTCAGGAGTTTGCATAGACATATTTGCTGTAACTGATGAATACACGGATTTGGCTTCACTGAAGTTTTTAAGTATTGAAAGTG

upper sequence: GLYMA11G18930.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G095810_T01 (Zea mays), 3'ss of exon 6
gta-tttaacttatgttattgttactcccgtgtcccatttcctaaaagtggaagaattgacatttgtattacagGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTG
|||  ||  |  |       || | |    | |   | |   | | | |   | |  |||      ||| ||||||| ||  ||||||||||||||||||||| || ||| | |||||  | |||||||| ||||||||| |  | || || ||| |||||||| |||| ||||
gtaactttgcacaaagatcagtcaatatactatgataatattttagaat---atatctgattggcatatcacagGCTACTAGTGCTGTTCAAGCAGGTGTATGCGTGGACCTTTTTGCAATTACAAATGAATACACTGATCTTACTTCTCTGAAAGTTCTGAGTGTTGAGAGTG

upper sequence: GLYMA11G18930.1 (Glycine max), 3'ss of exon 6
lower sequence: AT2G27460.1 (Arabidopsis thaliana), 3'ss of exon 6
---gtatttaacttatgttattgttactcccgtgtcc-catttcctaaaagtggaagaattgacatttgtattacagGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTG
       |||  | | | | || |  |||| |  |    || | ||   ||   | ||  | ||   | | ||| ||||  |  ||||||| ||| ||||||||||||| ||  ||||||| || |||||||||||||| ||||| |||||||| || || || || ||||||||||
gtaagtcttatttcaagattttctgtctccggaatggatatattctttgagctta-gatctaacggctcttttatagGCCACCATTGCTGTCCAATCAGGTGTATGTGTAGATTTATTTGCAGTTACAAATGAGTACACAGATTTAGCATCCCTGAAGTTCCTTAGCATTGAAAGTG

upper sequence: GLYMA11G18930.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0080g00510.t01 (Vitis vinifera), 3'ss of exon 6
------gt-atttaacttatg--ttattgttactcccgtgtcccatttcctaaaagtggaagaattgacatttgtattacagGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTG
      || || | | ||||   ||||| || ||   ||      |||    | |    ||  |||||||  | | | |||||||||||| ||||||||||||||||| ||||| || |||||||| || ||||| ||||| || ||||||||||||||||||||||| |||||||||||||
gtaattgtgatctgaattattatttattttttctttagttggatgtttttgtagaacataaacattgacacatatttcacagGCTGCTGTCGCTGTTCAAGCAGGTGTTTGTGTGGATATATTTGCTGTTACAAACGAGTATACGGATTTGGCATCCCTAAAATTTCTTAGTATTGAAAGTG

upper sequence: GLYMA11G18930.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S220_95V6.1 (Physcomitrella patens), 3'ss of exon 6
-------------------gtatttaacttatgttattgt-tactcccgtgtcccatttcctaaaagtggaagaattgaca-------tttgtattacagGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTG
                      |  |   || |||| ||  |  |     |   ||||  ||   |   | | ||  |  |       ||| || | ||||| ||    || || | |||||| || || || ||| ||||||| || ||||||||||||||| ||||||| || || || | ||||||||| ||||| |
agcagtattatgttttagaaagtggatgatacgttagtgggttgtaataggattcattgacttgcatcagcataaccgggacgagctttttctactgcagGCCGCACAAGCAGTGCTAGCAGGCGTTTGCGTGGACCTATTTGCTGTCACAAATGAGTACACTAATTTGGCCTCACTCAAGTATCTGAGTATAGAAAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttactcccgtgtcccatttcctaaaagtggaagaattgacatttgtattacagGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTG
                                          atttgtatta  TA-rich tract