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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaattgtttgtttctgccatttcatttcaatggccattgaagtgaaatcaaatcatatgtttcatacactattgcccttcatgttttttcaaactagGATCTTGGTGGATCTCTAGGTAGAGACGTGGCTACGGGATGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGAAAGAGTGTATCTGGAC

Basic information

species Glycine max
transcript GLYMA11G16320.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G16320.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G18170.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagtaattgtttgtttctgccatttcatttcaatggccattgaagtgaaatcaaatcatatgtttcatacactattgcccttcatgttttttcaaactagGATCTTGGTGGATCTCTAGGTAGAGACGTGGCTACGGGATGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGAAAGAGTGTATCTGGAC
|| |||||    |  |     | || |  |||   |    | ||  ||  || ||  | | |||||| ||               |||||| |   ||| |||||||||||||||| ||||| ||||||| |||||| ||| | |||||  | ||||  || || ||||||||||| ||| | |||||||   |||| || |
gtaagtaaagaataatc---acaatcttgttttgctaatgactg--gtttaaccacctga-atgtttaatg--------------atgtttat--gaaccagGATCTTGGTGGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGTACCGAAGCTTTGCTTAACGAGCACGGAAAGACCATATCAGGGC

upper sequence: GLYMA11G16320.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv08s0007g07400.t01 (Vitis vinifera), 3'ss of exon 6
gtgagtaattgtttgtttctgccatttcatttcaatggccattgaagtgaaatcaaatcatatgt-ttcatacactattgcccttcatgttttttcaaactagGATCTTGGTGGATCTCTAGGTAGAGACGTGGCTACGGGATGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGAAAGAGTGTATCTGGAC
   | |  |||     | ||    |   ||  | |||     |   |     |   ||  | | | ||  || | | |  |  |      || || ||| |||||||| ||||||||||| || ||||| |  ||||| ||| ||||||| |||||||||||||||||  | ||| ||||  |||| |||||  |  | ||||
---attctttggcatatcctatattgaaatcaccatgatgtatattgctgccttggattctgtttgtttctataatctgacagtgataaattctttaaattagGATCTCGGTGGATCTCTGGGCAGAGATGCAGCTACAGGAAGGGGAGTACTCTTTGCAACAGAGGCCCTTCTTCATGAACATGGGAAGAGCATTGCCGGAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaatcaaatcatatgtttcatacactattgcccttcatgttttttcaaactagGATCTTGGTGGATCTCTAGGTAGAGACGTGGCTACGGGATGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGAAAGAGTGTATCTGGAC
                                cccttcatgttttttc  CT-rich tract
                                         ttttttcaaa  TA-rich tract