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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtaccattaaatatggtttcttatttctttatgataaagagaaacactatacatcagtacatgcagatactatttattcagtcaatttattatctcatccacttttttggtggtcagatccacttttcatttatgtttcttactatataattttttaattttaattttcctcatcatattgcagTGTGATGATCCAAGATGCCATGTGTGGCAACACATCAGTTGTGTTATTATTCCCGAGAAACCTACCGAAGGCATCCCACCAGTTCCTGATAAATTTTATT

Basic information

species Glycine max
transcript GLYMA11G15880.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209725365|gb|BW658250.1|BW658250
EST:     AGATTCGCTGTCTATGTGGAAGTAGATTGGAAACAGAGGATTTGGTCAAG                         TGTGATGATCCAAGATGCCATGTGTGGCAACACATCAGTTGTGTTATTATT
genomic: AGATTCGCTGTCTATGTGGAAGTAGATTGGAAACAGAGGATTTGGTCAAGgtgtaccatt ... catattgcagTGTGATGATCCAAGATGCCATGTGTGGCAACACATCAGTTGTGTTATTATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgtttcttactatataattttttaattttaattttcctcatcatattgcagTGTGATGATCCAAGATGCCATGTGTGGCAACACATCAGTTGTGTTATTATTCCCGAGAAACCTACCGAAGGCATCCCACCAGTTCCTGATAAATTTTATT
                                   ttttcctcatc  CT-rich tract
      tttcttactatataat  TA-rich tract