Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgatgataaatgtttttttatgtttgatatatttatgcatcttgtacaataaagaataatatgatataaacaaaaatatttcagGTTCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAA
Basic information
species | Glycine max |
transcript | GLYMA11G15480.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G15480.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g03940.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtgatgataaatgtttttttatgtttgatatattt----atgcatcttgtacaataaagaataatatgatataaacaaaaatatttcagGTTCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAA
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gtaattaagga-gcttgcattttgctcttggatacttcttttggtgcggttagccctgcagtcag-aatgtaatttagactgaaaaatttcagGTTCCCTGAGAAAACAAGGTCTTGGAGTTAGTCCTATTGTTCAACAGAACCAAGAGTTCAGCATCCAAAATGAGGATTTTCCAGCTTTACCGGGATTTAA
upper sequence: GLYMA11G15480.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ16761 (Selaginella moellendorffii), 3'ss of exon 4
gtaagtgatgataaatgtttttttatgtttgatatatttatgcatcttgtacaataaagaataatatgatataaacaaaaatatttcagGTTCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAA--
||| | | ||| | || || |||| || || | | | | | ||| | || |||||||| || || | | ||| |||||||| || ||||||||||| ||||| ||||||||||| || ||||| || |||||
--------------------------gttggttggctttgaggtcctc---taagaaagcgcaa----atttgactttgtaaactgcagCCGCATTCCGAAAACAAGGC------GTCAACTCGCTTGGCCAACAAAATCAGGAGTTTAGCATACAAAACGAAGATTTCCCCGCCTTACCTGGTTTCAAAG
upper sequence: GLYMA11G15480.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ06690 (Selaginella moellendorffii), 3'ss of exon 6
gtaagtgatgataaatgtttttttatgtttgatatatttatgcatcttgtacaataaagaataatatgatataaacaaaaatatttcagGTTCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAA--
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--------------------------gttggttggctttgaggtcctc---taaaaaagcgcaa----atttgactttgtaaactgcagCCGCATTCCGAAAACAAGGC------GTCAACTCGCTTGGCCAACAAAATCAGGAGTTTAGCATACAAAACGAAGATTTCCCCGCCTTACCTGGTTTCAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatttatgcatcttgtacaataaagaataatatgatataaacaaaaatatttcagGTTCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAA
ttgtacaataaagaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtgatgataaatgtttttttatgtttgatatatttatgcatcttgtacaataaagaataatatgatataaacaaaaatatttcagGTTCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA