1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ttgacattgtttccaaaaatcattgcaagttatatttactgtttactctttggaagacaattttttctaagcattgtattctgatataacaatgctgcagGAGTGATTCTCTTTCCTTATTGCCTTCATCATTTACACCCCAAGATGCATCAAAAATGTTGTCCCTATGTCAATCTGTTCAAAATGCTCTTAAG
species | Glycine max |
transcript | GLYMA11G15470.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTGAGATGCTAGACGCTTCTACTGAGGATGCTCTTGACCGTGGTAGCTG GAGTGATTCTCTTTCCTTATTGCCTTCATCATTTACACCCCAAGATGCATCEST: gi|15663582|gb|BI700953.1|BI700953
genomic: ATTGAGATGCTAGACGCTTCTACTGAGGATGCTCTTGACCGTGGTAGCTGgtaagcaccg ... aatgctgcagGAGTGATTCTCTTTCCTTATTGCCTTCATCATTTACACCCCAAGATGCATC
EST: ATTGAGATGCTAGACGCTTCTACTGAGGATGCTCTTGACCGTGGTAGCTG GAGTGATTCTCTTTCCTTATTGCCTTCATCATTTACACCCCAAGATGCATC
genomic: ATTGAGATGCTAGACGCTTCTACTGAGGATGCTCTTGACCGTGGTAGCTGgtaagcaccg ... aatgctgcagGAGTGATTCTCTTTCCTTATTGCCTTCATCATTTACACCCCAAGATGCATC
ctctttggaagacaattttttctaagcattgtattctgatataacaatgctgcagGAGTGATTCTCTTTCCTTATTGCCTTCATCATTTACACCCCAAGATGCATCAAAAATGTTGTCCCTATGTCAATCTGTTCAAAATGCTCTTAAG
atataac putative branch site (score: 3)
acaattttttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgacattgtttccaaaaatcattgcaagttatatttactgtttactctttggaagacaattttttctaagcattgtattctgatataacaatgctgcagGAGTGATTCTCTTTCCTTATTGCCTTCATCATTTACACCCCAAGATGCATCAAAAATGTTGTCCCTATGTCAATCTGTTCAAAATGCTCTTAAG
- - - -tgtttcc
- - - - - - - - - - - -tgcaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtattc