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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagattgaccctataagttatagtttttggtattatggtttctggtaatgtcattctaaaattatttaccttcatggtattatcagGCTCAGCGGGATATGTATCTTTTGCTCTCAAGGTTCATTCTATTTTACAACAAAG

Basic information

species Glycine max
transcript GLYMA11G15030.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18735227|gb|BM528642.1|BM528642
EST:     TGGAAGATGTTGGATTAGACCACACTCGATTGAATAAAATTCCTTTCCAG                         GCTCAGCGGGATATGTATCTTTTGCTCTCAAGGTTCATTCTATTTTACAAC
genomic: TGGAAGATGTTGGATTAGACCACACTCGATTGAATAAAATTCCTTTCCAGgtcagattga ... gtattatcagGCTCAGCGGGATATGTATCTTTTGCTCTCAAGGTTCATTCTATTTTACAAC
EST: gi|17964327|gb|BM271064.1|BM271064
EST:     TGGAAGATGTTGGATTAGACCACACTCGATTGAATAAAATTCCTTTCCAG                         GCTCAGCGGGATATGTATCTTTTGCTCTCAAGGTTCATTCTATTTTACAAC
genomic: TGGAAGATGTTGGATTAGACCACACTCGATTGAATAAAATTCCTTTCCAGgtcagattga ... gtattatcagGCTCAGCGGGATATGTATCTTTTGCTCTCAAGGTTCATTCTATTTTACAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatggtttctggtaatgtcattctaaaattatttaccttcatggtattatcagGCTCAGCGGGATATGTATCTTTTGCTCTCAAGGTTCATTCTATTTTACAACAAAG
                      ttctaaa  putative branch site (score: 2)
              taatgtcattctaaaa  TA-rich tract