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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatctctttttctaaatacaaaagtggatgatctacatcattgccatccgtgtatcttacaagtagtaattttgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCCACAACCAGAAAGCTATTGGGGCAATGTAAACCCCATTG

Basic information

species Glycine max
transcript GLYMA11G15010.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15010.1 (Glycine max), 3'ss of exon 6
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 3'ss of exon 5
gttatctctttttctaaatacaaaagtgg----atgatctacatc-attgccatccgtgtatcttac-aagtagtaattttgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCCACAACCAGAAAGCTATTGGGGCAATGTAAACCCCATTG
         ||| | ||||   |   |      || |  ||| ||  |||   | ||  | | | || || |     || |    ||||||||||||||||| || || || || |||||||| || |||||  | ||||| || || || ||||||||||| ||||| ||||| ||||
--------gtttgcaaaatgataccctctttttattacttacttctgttgatcttcgcctttgtgactaacttactcttctaccggacagGATTTTGCTTACCTCAACCTCGGAGGTATATGGAGATCCTCTCATTCATCCCCAGCCTGAGAGCTATTGGGGAAATGTCAACCCAATTG

upper sequence: GLYMA11G15010.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 3'ss of exon 6
gttatctctttttctaaatacaaaagtggatgatctacatcattgccatccgtgtatcttacaagtagtaattttgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCCACAACCAGAAAGCTATTGGGGCAATGTAAACCCCATTG
|||     |||  ||  ||   |       | | |   |||||    ||   |  || |   || |  |  |  || || ||||||| ||||||||||| ||||||||||||||||| || ||||||| |||||| ||| | || ||||||||||| ||||| ||||| || |
gtttgggatttgacttcattttatt-cctttaaccaggatcataa--atttctcaatttattaaattatgttaatgtttaacagGATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525432|gb|BU084243.1|BU084243
EST:     GTGATTGGAACACTGAACATGCTTGGGCTTGCTAAGCGTGTGGGAGCAAG                         GATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCC
genomic: GTGATTGGAACACTGAACATGCTTGGGCTTGCTAAGCGTGTGGGAGCAAGgttatctctt ... tgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCC
EST: gi|18040716|gb|BM309010.1|BM309010
EST:     GTGATTGGAACACTGAACATGCTTGGGCTTGCTAAGCGTGTGGGAGCAAG                         GATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCC
genomic: GTGATTGGAACACTGAACATGCTTGGGCTTGCTAAGCGTGTGGGAGCAAGgttatctctt ... tgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatctacatcattgccatccgtgtatcttacaagtagtaattttgattgacagGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGTGCATCCACAACCAGAAAGCTATTGGGGCAATGTAAACCCCATTG
                                    tagtaattttgatt  TA-rich tract